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Items: 1 to 20 of 113

1.

A fast and precise approach for computational saturation mutagenesis and its experimental validation by using an artificial (βα)8-barrel protein.

Fischer A, Seitz T, Lochner A, Sterner R, Merkl R, Bocola M.

Chembiochem. 2011 Jul 4;12(10):1544-50. doi: 10.1002/cbic.201100051. Epub 2011 May 30.

PMID:
21626637
2.

Stabilisation of a (betaalpha)8-barrel protein designed from identical half barrels.

Seitz T, Bocola M, Claren J, Sterner R.

J Mol Biol. 2007 Sep 7;372(1):114-29. Epub 2007 Jun 19.

PMID:
17631894
4.

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.

Masso M, Vaisman II.

Bioinformatics. 2008 Sep 15;24(18):2002-9. doi: 10.1093/bioinformatics/btn353. Epub 2008 Jul 16.

PMID:
18632749
5.

Protein quadratic indices of the "macromolecular pseudograph's alpha-carbon atom adjacency matrix". 1. Prediction of Arc repressor alanine-mutant's stability.

Ponce YM, Marrero RM, Castro EA, Ramos de Armas R, Díaz HG, Zaldivar VR, Torrens F.

Molecules. 2004 Dec 31;9(12):1124-47. Review.

6.

Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details.

Potapov V, Cohen M, Schreiber G.

Protein Eng Des Sel. 2009 Sep;22(9):553-60. doi: 10.1093/protein/gzp030. Epub 2009 Jun 26.

PMID:
19561092
7.

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.

Dehouck Y, Grosfils A, Folch B, Gilis D, Bogaerts P, Rooman M.

Bioinformatics. 2009 Oct 1;25(19):2537-43. doi: 10.1093/bioinformatics/btp445. Epub 2009 Aug 3.

PMID:
19654118
8.

Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations.

Carter CW Jr, LeFebvre BC, Cammer SA, Tropsha A, Edgell MH.

J Mol Biol. 2001 Aug 24;311(4):625-38.

PMID:
11518520
9.

De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure.

Offredi F, Dubail F, Kischel P, Sarinski K, Stern AS, Van de Weerdt C, Hoch JC, Prosperi C, François JM, Mayo SL, Martial JA.

J Mol Biol. 2003 Jan 3;325(1):163-74.

10.
11.

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.

Chiappori F, D'Ursi P, Merelli I, Milanesi L, Rovida E.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S3. doi: 10.1186/1471-2105-10-S12-S3.

12.

High-resolution crystal structure of an artificial (betaalpha)(8)-barrel protein designed from identical half-barrels.

Höcker B, Lochner A, Seitz T, Claren J, Sterner R.

Biochemistry. 2009 Feb 17;48(6):1145-7. doi: 10.1021/bi802125b.

PMID:
19166324
13.

CUPSAT: prediction of protein stability upon point mutations.

Parthiban V, Gromiha MM, Schomburg D.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W239-42.

14.

Establishing catalytic activity on an artificial (βα)8-barrel protein designed from identical half-barrels.

Sperl JM, Rohweder B, Rajendran C, Sterner R.

FEBS Lett. 2013 Sep 2;587(17):2798-805. doi: 10.1016/j.febslet.2013.06.022. Epub 2013 Jun 24.

15.

Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins.

Olivera-Nappa A, Andrews BA, Asenjo JA.

BMC Bioinformatics. 2011 Apr 27;12:122. doi: 10.1186/1471-2105-12-122.

16.

High-throughput screening for enhanced protein stability.

Bommarius AS, Broering JM, Chaparro-Riggers JF, Polizzi KM.

Curr Opin Biotechnol. 2006 Dec;17(6):606-10. Epub 2006 Oct 17. Review.

PMID:
17049838
17.

In the quest for stable rescuing mutants of p53: computational mutagenesis of flexible loop L1.

Pan Y, Ma B, Venkataraghavan RB, Levine AJ, Nussinov R.

Biochemistry. 2005 Feb 8;44(5):1423-32.

PMID:
15683227
19.

Performance of protein stability predictors.

Khan S, Vihinen M.

Hum Mutat. 2010 Jun;31(6):675-84. doi: 10.1002/humu.21242.

PMID:
20232415
20.

Betaalpha-hairpin clamps brace betaalphabeta modules and can make substantive contributions to the stability of TIM barrel proteins.

Yang X, Kathuria SV, Vadrevu R, Matthews CR.

PLoS One. 2009 Sep 29;4(9):e7179. doi: 10.1371/journal.pone.0007179.

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