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Items: 1 to 20 of 154

1.

Interplay of recombination and selection in the genomes of Chlamydia trachomatis.

Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD.

Biol Direct. 2011 May 26;6:28. doi: 10.1186/1745-6150-6-28.

2.

Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure.

Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D.

Mol Biol Evol. 2012 Dec;29(12):3933-46. doi: 10.1093/molbev/mss198. Epub 2012 Aug 13.

3.

Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages.

Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D.

MBio. 2011 May 3;2(3):e00045-11. doi: 10.1128/mBio.00045-11. Print 2011.

4.

Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis.

Ferreira R, Borges V, Nunes A, Nogueira PJ, Borrego MJ, Gomes JP.

G3 (Bethesda). 2012 Jul;2(7):761-8. doi: 10.1534/g3.112.002923. Epub 2012 Jul 1.

5.

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Read TD, Brunham RC, Shen C, Gill SR, Heidelberg JF, White O, Hickey EK, Peterson J, Utterback T, Berry K, Bass S, Linher K, Weidman J, Khouri H, Craven B, Bowman C, Dodson R, Gwinn M, Nelson W, DeBoy R, Kolonay J, McClarty G, Salzberg SL, Eisen J, Fraser CM.

Nucleic Acids Res. 2000 Mar 15;28(6):1397-406.

6.

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D.

Genome Res. 2007 Jan;17(1):50-60. Epub 2006 Nov 7.

7.

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.

Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morré SA, Speksnijder A, Bébéar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR.

Nat Genet. 2012 Mar 11;44(4):413-9, S1. doi: 10.1038/ng.2214.

9.

Genome-wide recombination in Chlamydia trachomatis.

Joseph SJ, Read TD.

Nat Genet. 2012 Mar 28;44(4):364-6. doi: 10.1038/ng.2225.

PMID:
22456736
10.

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain.

Seth-Smith HM, Harris SR, Persson K, Marsh P, Barron A, Bignell A, Bjartling C, Clark L, Cutcliffe LT, Lambden PR, Lennard N, Lockey SJ, Quail MA, Salim O, Skilton RJ, Wang Y, Holland MJ, Parkhill J, Thomson NR, Clarke IN.

BMC Genomics. 2009 May 21;10:239. doi: 10.1186/1471-2164-10-239.

11.
12.

Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes.

Soyer Y, Orsi RH, Rodriguez-Rivera LD, Sun Q, Wiedmann M.

BMC Evol Biol. 2009 Nov 14;9:264. doi: 10.1186/1471-2148-9-264.

13.

Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis.

Pannekoek Y, Morelli G, Kusecek B, Morré SA, Ossewaarde JM, Langerak AA, van der Ende A.

BMC Microbiol. 2008 Feb 28;8:42. doi: 10.1186/1471-2180-8-42.

14.

Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation.

Borges V, Gomes JP.

Infect Genet Evol. 2015 Jun;32:74-88. doi: 10.1016/j.meegid.2015.02.026. Epub 2015 Mar 3.

PMID:
25745888
15.

Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range.

Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D.

MBio. 2013 Mar 26;4(2). pii: e00604-12. doi: 10.1128/mBio.00604-12.

17.
18.

Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium.

Haven J, Vargas LC, Mongodin EF, Xue V, Hernandez Y, Pagan P, Fraser-Liggett CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG.

Genetics. 2011 Nov;189(3):951-66. doi: 10.1534/genetics.111.130773. Epub 2011 Sep 2.

19.

Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations.

Putman TE, Suchland RJ, Ivanovitch JD, Rockey DD.

Microbiology. 2013 Oct;159(Pt 10):2109-17. doi: 10.1099/mic.0.070029-0. Epub 2013 Jul 10.

20.

Evolution of Chlamydia trachomatis.

Clarke IN.

Ann N Y Acad Sci. 2011 Aug;1230:E11-8. doi: 10.1111/j.1749-6632.2011.06194.x. Review.

PMID:
22239534

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