Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 72

1.

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design.

Faircloth BC.

Mol Ecol Resour. 2008 Jan;8(1):92-4. doi: 10.1111/j.1471-8286.2007.01884.x.

PMID:
21585724
2.

Simple sequence repeat marker loci discovery using SSR primer.

Robinson AJ, Love CG, Batley J, Barker G, Edwards D.

Bioinformatics. 2004 Jun 12;20(9):1475-6. Epub 2004 Feb 12.

PMID:
14962913
3.

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

Meglécz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, Martin JF.

Bioinformatics. 2010 Feb 1;26(3):403-4. doi: 10.1093/bioinformatics/btp670. Epub 2009 Dec 10.

PMID:
20007741
4.

GenomeDiagram: a python package for the visualization of large-scale genomic data.

Pritchard L, White JA, Birch PR, Toth IK.

Bioinformatics. 2006 Mar 1;22(5):616-7. Epub 2005 Dec 23.

PMID:
16377612
5.

FASconCAT: Convenient handling of data matrices.

Kück P, Meusemann K.

Mol Phylogenet Evol. 2010 Sep;56(3):1115-8. doi: 10.1016/j.ympev.2010.04.024. Epub 2010 Apr 21.

PMID:
20416383
6.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

7.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

8.

New softwares for automated microsatellite marker development.

Martins W, de Sousa D, Proite K, Guimarães P, Moretzsohn M, Bertioli D.

Nucleic Acids Res. 2006 Feb 21;34(4):e31.

9.

MultiPLX: automatic grouping and evaluation of PCR primers.

Kaplinski L, Andreson R, Puurand T, Remm M.

Bioinformatics. 2005 Apr 15;21(8):1701-2. Epub 2004 Dec 14.

PMID:
15598831
10.

Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files.

Finney RP, Chen QR, Nguyen CV, Hsu CH, Yan C, Hu Y, Abawi M, Bian X, Meerzaman DM.

Cancer Inform. 2015 Sep 13;14:105-7. doi: 10.4137/CIN.S26470. eCollection 2015. Review.

11.

Open source clustering software.

de Hoon MJ, Imoto S, Nolan J, Miyano S.

Bioinformatics. 2004 Jun 12;20(9):1453-4. Epub 2004 Feb 10.

PMID:
14871861
12.

Primer3Plus, an enhanced web interface to Primer3.

Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W71-4. Epub 2007 May 7.

13.

prfectBLAST: a platform-independent portable front end for the command terminal BLAST+ stand-alone suite.

Santiago-Sotelo P, Ramirez-Prado JH.

Biotechniques. 2012 Nov;53(5):299-300. doi: 10.2144/000113953.

14.

BDTcomparator: a program for comparing binary classifiers.

Fijorek K, Fijorek D, Wisniowska B, Polak S.

Bioinformatics. 2011 Dec 15;27(24):3439-40. doi: 10.1093/bioinformatics/btr574. Epub 2011 Oct 13.

PMID:
21998157
15.
16.

EasyExonPrimer: automated primer design for exon sequences.

Wu X, Munroe DJ.

Appl Bioinformatics. 2006;5(2):119-20.

PMID:
16722777
17.

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.

Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S.

BMC Genomics. 2007 Aug 14;8:275.

18.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

19.

Genome-tools: a flexible package for genome sequence analysis.

Lee W, Chen SL.

Biotechniques. 2002 Dec;33(6):1334-41.

PMID:
12503321
20.

X-HUSAR, an X-based graphical interface for the analysis of genomic sequences.

Senger M, Glatting KH, Ritter O, Suhai S.

Comput Methods Programs Biomed. 1995 Feb;46(2):131-41.

PMID:
7796582

Supplemental Content

Support Center