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Items: 1 to 20 of 109

1.

iPath2.0: interactive pathway explorer.

Yamada T, Letunic I, Okuda S, Kanehisa M, Bork P.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W412-5. doi: 10.1093/nar/gkr313. Epub 2011 May 5.

2.

iPath: interactive exploration of biochemical pathways and networks.

Letunic I, Yamada T, Kanehisa M, Bork P.

Trends Biochem Sci. 2008 Mar;33(3):101-3. doi: 10.1016/j.tibs.2008.01.001. Epub 2008 Feb 13.

PMID:
18276143
3.

KEGG Atlas mapping for global analysis of metabolic pathways.

Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6. doi: 10.1093/nar/gkn282. Epub 2008 May 13.

4.

MetPA: a web-based metabolomics tool for pathway analysis and visualization.

Xia J, Wishart DS.

Bioinformatics. 2010 Sep 15;26(18):2342-4. doi: 10.1093/bioinformatics/btq418. Epub 2010 Jul 13.

PMID:
20628077
5.

MetNetGE: interactive views of biological networks and ontologies.

Jia M, Choi SY, Reiners D, Wurtele ES, Dickerson JA.

BMC Bioinformatics. 2010 Sep 17;11:469. doi: 10.1186/1471-2105-11-469.

6.

Genome Projector: zoomable genome map with multiple views.

Arakawa K, Tamaki S, Kono N, Kido N, Ikegami K, Ogawa R, Tomita M.

BMC Bioinformatics. 2009 Jan 23;10:31. doi: 10.1186/1471-2105-10-31.

7.

Web-based metabolic network visualization with a zooming user interface.

Latendresse M, Karp PD.

BMC Bioinformatics. 2011 May 19;12:176. doi: 10.1186/1471-2105-12-176.

8.

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

Choi K, Kim S.

BMC Bioinformatics. 2008 Mar 6;9:145. doi: 10.1186/1471-2105-9-145.

9.

Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.

Neuweger H, Persicke M, Albaum SP, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A.

BMC Syst Biol. 2009 Aug 23;3:82. doi: 10.1186/1752-0509-3-82.

10.

GLAMM: Genome-Linked Application for Metabolic Maps.

Bates JT, Chivian D, Arkin AP.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W400-5. doi: 10.1093/nar/gkr433. Epub 2011 May 29.

11.

GSV: a web-based genome synteny viewer for customized data.

Revanna KV, Chiu CC, Bierschank E, Dong Q.

BMC Bioinformatics. 2011 Aug 2;12:316. doi: 10.1186/1471-2105-12-316.

12.

Visualization for genomics: the Microbial Genome Viewer.

Kerkhoven R, van Enckevort FH, Boekhorst J, Molenaar D, Siezen RJ.

Bioinformatics. 2004 Jul 22;20(11):1812-4. Epub 2004 Feb 26.

PMID:
14988111
13.

The SGN comparative map viewer.

Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.

Bioinformatics. 2008 Feb 1;24(3):422-3. doi: 10.1093/bioinformatics/btm597. Epub 2008 Jan 17.

PMID:
18202028
14.

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D297-302.

15.

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.

Moutselos K, Kanaris I, Chatziioannou A, Maglogiannis I, Kolisis FN.

BMC Bioinformatics. 2009 Oct 8;10:324. doi: 10.1186/1471-2105-10-324.

16.

Genomic data visualization on the Web.

Wu W, Noble WS.

Bioinformatics. 2004 Jul 22;20(11):1804-5. Epub 2004 Feb 26.

PMID:
14988106
17.

metaSHARK: a WWW platform for interactive exploration of metabolic networks.

Hyland C, Pinney JW, McConkey GA, Westhead DR.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W725-8.

18.

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.

Zhu Z, Niu B, Chen J, Wu S, Sun S, Li W.

Bioinformatics. 2013 Jan 1;29(1):122-3. doi: 10.1093/bioinformatics/bts567. Epub 2012 Oct 8.

19.

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.

Klamt S, Stelling J, Ginkel M, Gilles ED.

Bioinformatics. 2003 Jan 22;19(2):261-9.

PMID:
12538248
20.

Acorn: a grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface.

Sroka J, Bieniasz-Krzywiec L, Gwóźdź S, Leniowski D, Lącki J, Markowski M, Avignone-Rossa C, Bushell ME, McFadden J, Kierzek AM.

BMC Bioinformatics. 2011 May 24;12:196. doi: 10.1186/1471-2105-12-196.

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