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Items: 1 to 20 of 135

1.

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4.

2.

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H.

Nat Biotechnol. 2007 Feb;25(2):221-31. Epub 2007 Jan 28.

PMID:
17259976
3.

Genomic analysis of the aconidial and high-performance protein producer, industrially relevant Aspergillus niger SH2 strain.

Yin C, Wang B, He P, Lin Y, Pan L.

Gene. 2014 May 15;541(2):107-14. doi: 10.1016/j.gene.2014.03.011. Epub 2014 Mar 11.

PMID:
24630962
4.
5.

Strain-specific polyketide synthase genes of Aspergillus niger.

Ferracin LM, Fier CB, Vieira ML, Monteiro-Vitorello CB, Varani Ade M, Rossi MM, Müller-Santos M, Taniwaki MH, Thie Iamanaka B, Fungaro MH.

Int J Food Microbiol. 2012 Apr 16;155(3):137-45. doi: 10.1016/j.ijfoodmicro.2012.01.020. Epub 2012 Jan 27.

PMID:
22341916
6.

Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some Secondary Metabolites.

Niu J, Arentshorst M, Nair PD, Dai Z, Baker SE, Frisvad JC, Nielsen KF, Punt PJ, Ram AF.

G3 (Bethesda). 2015 Nov 13;6(1):193-204. doi: 10.1534/g3.115.024067.

7.

Isolation and sequencing of a new glucoamylase gene from an Aspergillus niger aggregate strain (DSM 823) molecularly classified as Aspergillus tubingensis.

Manger-Jacob F, Müller T, Janssen M, Höfer M, Hölker U.

Antonie Van Leeuwenhoek. 2005 Oct-Nov;88(3-4):267-75. Erratum in: Antonie Van Leeuwenhoek. 2006 Jan;89(1):209.

PMID:
16284933
8.

Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles.

Yuan XL, van der Kaaij RM, van den Hondel CA, Punt PJ, van der Maarel MJ, Dijkhuizen L, Ram AF.

Mol Genet Genomics. 2008 Jun;279(6):545-61. doi: 10.1007/s00438-008-0332-7. Epub 2008 Mar 5.

9.

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications.

Otero JM, Vongsangnak W, Asadollahi MA, Olivares-Hernandes R, Maury J, Farinelli L, Barlocher L, Osterås M, Schalk M, Clark A, Nielsen J.

BMC Genomics. 2010 Dec 22;11:723. doi: 10.1186/1471-2164-11-723.

10.

Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger.

Yuan XL, Goosen C, Kools H, van der Maarel MJ, van den Hondel CA, Dijkhuizen L, Ram AF.

Microbiology. 2006 Oct;152(Pt 10):3061-73.

PMID:
17005986
11.

Aspergillus niger genomics: past, present and into the future.

Baker SE.

Med Mycol. 2006 Sep;44 Suppl 1:S17-21. Review.

PMID:
17050415
12.

De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.

Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M.

PLoS Genet. 2010 Apr 8;6(4):e1000891. doi: 10.1371/journal.pgen.1000891.

13.

Rewiring a secondary metabolite pathway towards itaconic acid production in Aspergillus niger.

Hossain AH, Li A, Brickwedde A, Wilms L, Caspers M, Overkamp K, Punt PJ.

Microb Cell Fact. 2016 Jul 28;15(1):130. doi: 10.1186/s12934-016-0527-2.

14.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.

PMID:
16372000
15.

Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.

Umemura M, Koike H, Yamane N, Koyama Y, Satou Y, Kikuzato I, Teruya M, Tsukahara M, Imada Y, Wachi Y, Miwa Y, Yano S, Tamano K, Kawarabayasi Y, Fujimori KE, Machida M, Hirano T.

DNA Res. 2012 Oct;19(5):375-82. doi: 10.1093/dnares/dss019. Epub 2012 Aug 21.

16.

The Aspergillus niger multicopper oxidase family: analysis and overexpression of laccase-like encoding genes.

Ramos JA, Barends S, Verhaert RM, de Graaff LH.

Microb Cell Fact. 2011 Oct 8;10:78. doi: 10.1186/1475-2859-10-78.

17.

Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger.

Guillemette T, van Peij N, Goosen T, Lanthaler K, Robson GD, van den Hondel CA, Stam H, Archer DB.

BMC Genomics. 2007 Jun 11;8:158.

18.

Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain.

Braumann I, van den Berg MA, Kempken F.

Mol Genet Genomics. 2008 Oct;280(4):319-25. doi: 10.1007/s00438-008-0367-9. Epub 2008 Aug 2.

PMID:
18677513
19.

Characterization of a novel allele of glucose oxidase from a Korean wild type strain of Aspergillus niger.

Kim MY, Chung HJ, Hong SY, Kim HR, Lee JC, Park SM, Lee JH, Yang MS, Kim DH.

Mol Cells. 2001 Jun 30;11(3):281-6.

20.

Properties of Aspergillus niger citrate synthase and effects of citA overexpression on citric acid production.

Ruijter GJ, Panneman H, Xu D, Visser J.

FEMS Microbiol Lett. 2000 Mar 1;184(1):35-40.

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