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Items: 1 to 20 of 122

1.

Synthesizing and databasing fossil calibrations: divergence dating and beyond.

Ksepka DT, Benton MJ, Carrano MT, Gandolfo MA, Head JJ, Hermsen EJ, Joyce WG, Lamm KS, Patané JS, Phillips MJ, Polly PD, Van Tuinen M, Ware JL, Warnock RC, Parham JF.

Biol Lett. 2011 Dec 23;7(6):801-3. doi: 10.1098/rsbl.2011.0356. Epub 2011 Apr 27.

2.

The Fossil Calibration Database-A New Resource for Divergence Dating.

Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, Polly PD, Phillips MJ, Smith NA, Smith ND, Van Tuinen M, Ware JL, Warnock RC.

Syst Biol. 2015 Sep;64(5):853-9. doi: 10.1093/sysbio/syv025. Epub 2015 Apr 27.

PMID:
25922515
3.

Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches.

Lukoschek V, Scott Keogh J, Avise JC.

Syst Biol. 2012 Jan;61(1):22-43. doi: 10.1093/sysbio/syr075. Epub 2011 Aug 13.

PMID:
21840843
4.

Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation.

Dornburg A, Beaulieu JM, Oliver JC, Near TJ.

Syst Biol. 2011 Jul;60(4):519-27. doi: 10.1093/sysbio/syr019. Epub 2011 Mar 23.

PMID:
21436104
5.

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

Sauquet H, Ho SY, Gandolfo MA, Jordan GJ, Wilf P, Cantrill DJ, Bayly MJ, Bromham L, Brown GK, Carpenter RJ, Lee DM, Murphy DJ, Sniderman JM, Udovicic F.

Syst Biol. 2012 Mar;61(2):289-313. doi: 10.1093/sysbio/syr116. Epub 2011 Dec 26.

PMID:
22201158
6.

An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae).

Arcila D, Alexander Pyron R, Tyler JC, Ortí G, Betancur-R R.

Mol Phylogenet Evol. 2015 Jan;82 Pt A:131-45. doi: 10.1016/j.ympev.2014.10.011. Epub 2014 Oct 24.

PMID:
25462998
7.

Xenopus in Space and Time: Fossils, Node Calibrations, Tip-Dating, and Paleobiogeography.

Cannatella D.

Cytogenet Genome Res. 2015;145(3-4):283-301. doi: 10.1159/000438910. Epub 2015 Aug 7.

PMID:
26279165
8.

Fossil calibrations and molecular divergence time estimates in centrarchid fishes (Teleostei: Centrarchidae).

Near TJ, Bolnick DI, Wainwright PC.

Evolution. 2005 Aug;59(8):1768-82.

PMID:
16329246
9.

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales.

Forest F.

Ann Bot. 2009 Oct;104(5):789-94. doi: 10.1093/aob/mcp192. Epub 2009 Aug 8.

10.

Methods for the quantitative comparison of molecular estimates of clade age and the fossil record.

Clarke JA, Boyd CA.

Syst Biol. 2015 Jan;64(1):25-41. doi: 10.1093/sysbio/syu068. Epub 2014 Oct 3.

PMID:
25281846
11.
12.

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae.

Thornhill AH, Popple LW, Carter RJ, Ho SY, Crisp MD.

Mol Phylogenet Evol. 2012 Apr;63(1):15-27. doi: 10.1016/j.ympev.2011.12.003. Epub 2011 Dec 14.

PMID:
22197806
13.

A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations.

Pyron RA.

Syst Biol. 2010 Mar;59(2):185-94. doi: 10.1093/sysbio/syp090. Epub 2009 Dec 17.

PMID:
20525629
14.

Dating Tips for Divergence-Time Estimation.

O'Reilly JE, dos Reis M, Donoghue PC.

Trends Genet. 2015 Nov;31(11):637-50. doi: 10.1016/j.tig.2015.08.001. Epub 2015 Oct 1. Review.

PMID:
26439502
15.

The origin and early evolution of Sauria: reassessing the permian Saurian fossil record and the timing of the crocodile-lizard divergence.

Ezcurra MD, Scheyer TM, Butler RJ.

PLoS One. 2014 Feb 27;9(2):e89165. doi: 10.1371/journal.pone.0089165. eCollection 2014. Erratum in: PLoS One. 2014;9(5):e97828.

16.

Vertebrate palaeontology of Australasia into the twenty-first century.

Nguyen JM, Molak M, Black KH, Fitzgerald EM, Travouillon KJ, Ho SY.

Biol Lett. 2011 Dec 23;7(6):804-6. doi: 10.1098/rsbl.2011.0549. Epub 2011 Jun 29.

17.

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times.

Inoue J, Donoghue PC, Yang Z.

Syst Biol. 2010 Jan;59(1):74-89. doi: 10.1093/sysbio/syp078. Epub 2009 Nov 25.

PMID:
20525621
18.

Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology.

Hipsley CA, Müller J.

Front Genet. 2014 May 26;5:138. doi: 10.3389/fgene.2014.00138. eCollection 2014.

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