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Items: 1 to 20 of 93

1.

[Comparison of genomes between Aspergillus nidulans and 30 filamentous ascomycetes].

Zeng ZQ, Zhao FY, Hsiang T, Yu ZH.

Yi Chuan. 2010 Nov;32(11):1195-202. Chinese.

PMID:
21513172
2.
3.

Combining transcriptome data with genomic and cDNA sequence alignments to make confident functional assignments for Aspergillus nidulans genes.

Sims AH, Gent ME, Robson GD, Dunn-Coleman NS, Oliver SG.

Mycol Res. 2004 Aug;108(Pt 8):853-7.

PMID:
15449589
4.
5.

Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes.

Patron NJ, Waller RF, Cozijnsen AJ, Straney DC, Gardiner DM, Nierman WC, Howlett BJ.

BMC Evol Biol. 2007 Sep 26;7:174.

6.

Prevalence of transcription factors in ascomycete and basidiomycete fungi.

Todd RB, Zhou M, Ohm RA, Leeggangers HA, Visser L, de Vries RP.

BMC Genomics. 2014 Mar 20;15:214. doi: 10.1186/1471-2164-15-214.

7.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.

PMID:
16372000
8.

Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae.

Nishida H, Katayama T, Suzuki Y, Kondo S, Horiuchi H.

Gene. 2013 Aug 1;525(1):5-10. doi: 10.1016/j.gene.2013.04.077. Epub 2013 May 8.

PMID:
23664982
9.

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.

Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M.

PLoS Genet. 2013;9(9):e1003820. doi: 10.1371/journal.pgen.1003820. Epub 2013 Sep 19.

10.

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karányi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S2-13. doi: 10.1016/j.fgb.2008.12.003. Epub 2008 Dec 25.

11.

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

Hane JK, Rouxel T, Howlett BJ, Kema GH, Goodwin SB, Oliver RP.

Genome Biol. 2011;12(5):R45. doi: 10.1186/gb-2011-12-5-r45. Epub 2011 May 24.

12.

Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi.

Veerappan CS, Avramova Z, Moriyama EN.

BMC Evol Biol. 2008 Jul 1;8:190. doi: 10.1186/1471-2148-8-190.

13.

Analysis of Aspergillus nidulans metabolism at the genome-scale.

David H, Ozçelik IS, Hofmann G, Nielsen J.

BMC Genomics. 2008 Apr 11;9:163. doi: 10.1186/1471-2164-9-163.

14.

Small heat shock proteins, phylogeny in filamentous fungi and expression analyses in Aspergillus nidulans.

Wu J, Wang M, Zhou L, Yu D.

Gene. 2016 Jan 10;575(2 Pt 3):675-9. doi: 10.1016/j.gene.2015.09.044. Epub 2015 Sep 25.

PMID:
26403724
16.

Cytochrome P450 monooxygenase CYP53 family in fungi: comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target.

Jawallapersand P, Mashele SS, Kovačič L, Stojan J, Komel R, Pakala SB, Kraševec N, Syed K.

PLoS One. 2014 Sep 15;9(9):e107209. doi: 10.1371/journal.pone.0107209. eCollection 2014.

17.

Proteins involved in microbody biogenesis and degradation in Aspergillus nidulans.

Kiel JA, van der Klei IJ.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S62-71. doi: 10.1016/j.fgb.2008.07.009. Epub 2008 Jul 24.

PMID:
18694841
18.

A phylogenomic analysis of the Ascomycota.

Robbertse B, Reeves JB, Schoch CL, Spatafora JW.

Fungal Genet Biol. 2006 Oct;43(10):715-25. Epub 2006 Jun 15.

PMID:
16781175
19.

Genomics of industrial Aspergilli and comparison with toxigenic relatives.

Machida M, Terabayashi Y, Sano M, Yamane N, Tamano K, Payne GA, Yu J, Cleveland TE, Nierman WC.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008 Sep;25(9):1147-51. doi: 10.1080/02652030802273114.

PMID:
18798040
20.

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data.

Diguistini S, Liao NY, Platt D, Robertson G, Seidel M, Chan SK, Docking TR, Birol I, Holt RA, Hirst M, Mardis E, Marra MA, Hamelin RC, Bohlmann J, Breuil C, Jones SJ.

Genome Biol. 2009;10(9):R94. doi: 10.1186/gb-2009-10-9-r94. Epub 2009 Sep 11.

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