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Items: 1 to 20 of 87

1.

Extensive DNA-binding specificity divergence of a conserved transcription regulator.

Baker CR, Tuch BB, Johnson AD.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7493-8. doi: 10.1073/pnas.1019177108. Epub 2011 Apr 15.

2.

Conservation and evolution of cis-regulatory systems in ascomycete fungi.

Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB.

PLoS Biol. 2004 Dec;2(12):e398. Epub 2004 Nov 9.

3.

Intercalation of a new tier of transcription regulation into an ancient circuit.

Booth LN, Tuch BB, Johnson AD.

Nature. 2010 Dec 16;468(7326):959-63. doi: 10.1038/nature09560.

4.

Engineered improvements in DNA-binding function of the MATa1 homeodomain reveal structural changes involved in combinatorial control.

Hart B, Mathias JR, Ott D, McNaughton L, Anderson JS, Vershon AK, Baxter SM.

J Mol Biol. 2002 Feb 15;316(2):247-56.

PMID:
11851335
5.

The basis for evolution of DNA-binding specificity of the Aft1 transcription factor in yeasts.

Gonçalves IR, Conde e Silva N, Garay CL, Lesuisse E, Camadro JM, Blaiseau PL.

Genetics. 2014 Jan;196(1):149-60. doi: 10.1534/genetics.113.157693. Epub 2013 Oct 30.

6.
7.

Evolution of alternative transcriptional circuits with identical logic.

Tsong AE, Tuch BB, Li H, Johnson AD.

Nature. 2006 Sep 28;443(7110):415-20.

PMID:
17006507
8.

Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains.

Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7660-5. doi: 10.1073/pnas.1221734110. Epub 2013 Apr 22.

9.
10.

A novel paired domain DNA recognition motif can mediate Pax2 repression of gene transcription.

Håvik B, Ragnhildstveit E, Lorens JB, Saelemyr K, Fauske O, Knudsen LK, Fjose A.

Biochem Biophys Res Commun. 1999 Dec 20;266(2):532-41.

PMID:
10600536
11.

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

Science. 2007 Aug 10;317(5839):815-9.

12.

MarR-like transcriptional regulator involved in detoxification of aromatic compounds in Sulfolobus solfataricus.

Fiorentino G, Ronca R, Cannio R, Rossi M, Bartolucci S.

J Bacteriol. 2007 Oct;189(20):7351-60. Epub 2007 Aug 3.

13.

Intersecting transcription networks constrain gene regulatory evolution.

Sorrells TR, Booth LN, Tuch BB, Johnson AD.

Nature. 2015 Jul 16;523(7560):361-5. doi: 10.1038/nature14613. Epub 2015 Jul 8.

14.

Expression of the beta3 tubulin gene (beta Tub60D) in the visceral mesoderm of Drosophila is dependent on a complex enhancer that binds Tinman and UBX.

Kremser T, Hasenpusch-Theil K, Wagner E, Buttgereit D, Renkawitz-Pohl R.

Mol Gen Genet. 1999 Dec;262(4-5):643-58.

PMID:
10628847
15.

A single amino acid change in CUP2 alters its mode of DNA binding.

Buchman C, Skroch P, Dixon W, Tullius TD, Karin M.

Mol Cell Biol. 1990 Sep;10(9):4778-87.

16.

Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene.

Shimell MJ, Peterson AJ, Burr J, Simon JA, O'Connor MB.

Dev Biol. 2000 Feb 1;218(1):38-52.

17.

DNA-binding specificity of the cut repeats from the human cut-like protein.

Harada R, Bérubé G, Tamplin OJ, Denis-Larose C, Nepveu A.

Mol Cell Biol. 1995 Jan;15(1):129-40.

18.
19.

Negative transcriptional regulation of PH081 expression in Saccharomyces cerevisiae.

Creasy CL, Shao D, Begman LW.

Gene. 1996 Feb 2;168(1):23-9.

PMID:
8626060
20.

Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species.

Liò P, Angelini C, De Feis I, Nguyen VA.

PLoS One. 2012;7(9):e42489. doi: 10.1371/journal.pone.0042489. Epub 2012 Sep 11.

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