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Items: 1 to 20 of 102

1.

Identity crisis? The need for systematic gene IDs.

Parsons M, Myler PJ, Berriman M, Roos DS, Stuart KD.

Trends Parasitol. 2011 May;27(5):183-4. doi: 10.1016/j.pt.2011.02.007. Epub 2011 Apr 5.

2.

Biodiversity informatics: the challenge of linking data and the role of shared identifiers.

Page RD.

Brief Bioinform. 2008 Sep;9(5):345-54. doi: 10.1093/bib/bbn022. Epub 2008 Apr 29. Review.

PMID:
18445641
3.
4.

IDconverter and IDClight: conversion and annotation of gene and protein IDs.

Alibés A, Yankilevich P, Cañada A, Díaz-Uriarte R.

BMC Bioinformatics. 2007 Jan 10;8:9.

5.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

6.

BioThesaurus: a web-based thesaurus of protein and gene names.

Liu H, Hu ZZ, Zhang J, Wu C.

Bioinformatics. 2006 Jan 1;22(1):103-5. Epub 2005 Nov 2.

PMID:
16267085
7.

Improving interoperability between microbial information and sequence databases.

Romano P, Dawyndt P, Piersigilli F, Swings J.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S23.

8.

MPSS: an integrated database system for surveying a set of proteins.

Hao P, He WZ, Huang Y, Ma LX, Xu Y, Xi H, Wang C, Liu BS, Wang JM, Li YX, Zhong Y.

Bioinformatics. 2005 May 1;21(9):2142-3. Epub 2005 Feb 4.

PMID:
15699026
9.

The EMBL Nucleotide Sequence Database.

Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, Vaughan R.

Nucleic Acids Res. 2002 Jan 1;30(1):21-6.

10.

IXDB, an X chromosome integrated database (update).

Leser U, Roest Crollius H, Lehrach H, Sudbrak R.

Nucleic Acids Res. 1999 Jan 1;27(1):123-7.

11.

The EMBL nucleotide sequence database.

Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Lombard V, Lopez R, Parkinson H, Redaschi N, Sterk P, Stoehr P, Tuli MA.

Nucleic Acids Res. 2001 Jan 1;29(1):17-21.

12.

Paper2sequences: retrieval of sequences listed in a publication.

Mersch H, Fuellen G.

Appl Bioinformatics. 2003;2(2):113-6.

PMID:
15130827
13.

TriTrypDB: a functional genomic resource for the Trypanosomatidae.

Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20.

14.

HOMGL-comparing genelists across species and with different accession numbers.

Blüthgen N, Kiełbasa SM, Cajavec B, Herzel H.

Bioinformatics. 2004 Jan 1;20(1):125-6.

PMID:
14693820
15.

HCVDB: hepatitis C virus sequences database.

Combet C, Penin F, Geourjon C, Deléage G.

Appl Bioinformatics. 2004;3(4):237-40.

PMID:
15702954
16.

The EMBL Nucleotide Sequence Database.

Stoesser G, Tuli MA, Lopez R, Sterk P.

Nucleic Acids Res. 1999 Jan 1;27(1):18-24.

17.

EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database.

Lombard V, Camon EB, Parkinson HE, Hingamp P, Stoesser G, Redaschi N.

Bioinformatics. 2002 May;18(5):763-4.

PMID:
12050074
18.

KEYnet: a keywords database for biosequences functional organization.

Licciulli F, Catalano D, D'Elia D, Lorusso V, Attimonelli M.

Nucleic Acids Res. 1999 Jan 1;27(1):365-7.

19.

A tool for gene expression based PubMed search through combining data sources.

Korotkiy M, Middelburg R, Dekker H, van Harmelen F, Lankelma J.

Bioinformatics. 2004 Aug 12;20(12):1980-2. Epub 2004 Mar 25.

PMID:
15044238
20.

SEMEDA: ontology based semantic integration of biological databases.

Köhler J, Philippi S, Lange M.

Bioinformatics. 2003 Dec 12;19(18):2420-7.

PMID:
14668226

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