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Items: 1 to 20 of 101

1.

Biochemical systems analysis of signaling pathways to understand fungal pathogenicity.

Garcia J, Sims KJ, Schwacke JH, Del Poeta M.

Methods Mol Biol. 2011;734:173-200. doi: 10.1007/978-1-61779-086-7_9.

2.

Translational Metabolomics of Head Injury: Exploring Dysfunctional Cerebral Metabolism with Ex Vivo NMR Spectroscopy-Based Metabolite Quantification.

Wolahan SM, Hirt D, Glenn TC.

In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 25.

3.

Sphingolipid signaling in fungal pathogens.

Rhome R, Del Poeta M.

Adv Exp Med Biol. 2010;688:232-7. Review.

4.

Systems Biology of Metabolism.

Nielsen J.

Annu Rev Biochem. 2017 Jun 20;86:245-275. doi: 10.1146/annurev-biochem-061516-044757. Epub 2017 Mar 8. Review.

PMID:
28301739
5.

Modeling and simulation in signal transduction pathways: a systems biology approach.

Suresh Babu CV, Joo Song E, Yoo YS.

Biochimie. 2006 Mar-Apr;88(3-4):277-83. Epub 2005 Sep 22.

PMID:
16213652
6.

Kinetic modeling of cell metabolism for microbial production.

Costa RS, Hartmann A, Vinga S.

J Biotechnol. 2016 Feb 10;219:126-41. doi: 10.1016/j.jbiotec.2015.12.023. Epub 2015 Dec 24. Review.

PMID:
26724578
7.

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Wheelock CE, Wheelock AM, Kawashima S, Diez D, Kanehisa M, van Erk M, Kleemann R, Haeggström JZ, Goto S.

Mol Biosyst. 2009 Jun;5(6):588-602. doi: 10.1039/b902356a. Epub 2009 Apr 27. Review.

PMID:
19462016
9.

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing.

Zhang Q, Bhattacharya S, Andersen ME, Conolly RB.

J Toxicol Environ Health B Crit Rev. 2010 Feb;13(2-4):253-76. doi: 10.1080/10937404.2010.483943.

PMID:
20574901
10.

Boolean modeling in systems biology: an overview of methodology and applications.

Wang RS, Saadatpour A, Albert R.

Phys Biol. 2012 Oct;9(5):055001. doi: 10.1088/1478-3975/9/5/055001. Epub 2012 Sep 25. Review.

PMID:
23011283
11.

Systems Biology Approaches for Host-Fungal Interactions: An Expanding Multi-Omics Frontier.

Culibrk L, Croft CA, Tebbutt SJ.

OMICS. 2016 Mar;20(3):127-38. doi: 10.1089/omi.2015.0185. Epub 2016 Feb 17. Review.

12.

Quantitation of cellular components in Cryptococcus neoformans for system biology analysis.

Singh A, Qureshi A, Del Poeta M.

Methods Mol Biol. 2011;734:317-33. doi: 10.1007/978-1-61779-086-7_16.

13.

Exploration of quantitative scoring metrics to compare systems biology modeling approaches.

Kaddi C, Oden ED, Quo CF, Wang MD.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:1121-4.

PMID:
18002159
14.

Mathematical modeling of pathogenicity of Cryptococcus neoformans.

Garcia J, Shea J, Alvarez-Vasquez F, Qureshi A, Luberto C, Voit EO, Del Poeta M.

Mol Syst Biol. 2008;4:183. doi: 10.1038/msb.2008.17. Epub 2008 Apr 15.

15.

Constraint-based models predict metabolic and associated cellular functions.

Bordbar A, Monk JM, King ZA, Palsson BO.

Nat Rev Genet. 2014 Feb;15(2):107-20. doi: 10.1038/nrg3643. Epub 2014 Jan 16. Review.

PMID:
24430943
16.

Enhancing the role of veterinary vaccines reducing zoonotic diseases of humans: linking systems biology with vaccine development.

Adams LG, Khare S, Lawhon SD, Rossetti CA, Lewin HA, Lipton MS, Turse JE, Wylie DC, Bai Y, Drake KL.

Vaccine. 2011 Sep 22;29(41):7197-206. doi: 10.1016/j.vaccine.2011.05.080. Epub 2011 Jun 7.

17.

Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks.

Bassel GW, Gaudinier A, Brady SM, Hennig L, Rhee SY, De Smet I.

Plant Cell. 2012 Oct;24(10):3859-75. doi: 10.1105/tpc.112.100776. Epub 2012 Oct 30. Review.

18.
19.

Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

Weckwerth W.

J Proteomics. 2011 Dec 10;75(1):284-305. doi: 10.1016/j.jprot.2011.07.010. Epub 2011 Jul 23. Review.

20.

An overview of bioinformatics methods for modeling biological pathways in yeast.

Hou J, Acharya L, Zhu D, Cheng J.

Brief Funct Genomics. 2016 Mar;15(2):95-108. doi: 10.1093/bfgp/elv040. Epub 2015 Oct 17. Review.

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