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Items: 1 to 20 of 87

1.

Increased number of microRNA target sites in genes encoded in CNV regions. Evidence for an evolutionary genomic interaction.

Felekkis K, Voskarides K, Dweep H, Sticht C, Gretz N, Deltas C.

Mol Biol Evol. 2011 Sep;28(9):2421-4. doi: 10.1093/molbev/msr078. Epub 2011 Mar 25.

PMID:
21441354
2.

Copy number variation of microRNA genes in the human genome.

Marcinkowska M, Szymanski M, Krzyzosiak WJ, Kozlowski P.

BMC Genomics. 2011 Apr 12;12:183. doi: 10.1186/1471-2164-12-183.

3.

CNVs-microRNAs interactions demonstrate unique characteristics in the human genome. An interspecies in silico analysis.

Dweep H, Georgiou GD, Gretz N, Deltas C, Voskarides K, Felekkis K.

PLoS One. 2013 Dec 2;8(12):e81204. doi: 10.1371/journal.pone.0081204. eCollection 2013.

4.

Insights into the regulation of human CNV-miRNAs from the view of their target genes.

Wu X, Zhang D, Li G.

BMC Genomics. 2012 Dec 18;13:707. doi: 10.1186/1471-2164-13-707.

5.

Prediction of human microRNA targets.

John B, Sander C, Marks DS.

Methods Mol Biol. 2006;342:101-13. Review.

PMID:
16957370
6.

No Evidence that MicroRNAs Coevolve with Genes Located in Copy Number Regions.

Jovelin R.

Mol Biol Evol. 2015 Jul;32(7):1890-4. doi: 10.1093/molbev/msv073. Epub 2015 Mar 24.

7.

A schematic workflow for collecting information about the interaction between copy number variants and microRNAs using existing resources.

Dweep H, Gretz N, Felekkis K.

Methods Mol Biol. 2014;1182:307-20. doi: 10.1007/978-1-4939-1062-5_26.

PMID:
25055921
8.

miRNA and miRNA target genes in copy number variations occurring in individuals with intellectual disability.

Qiao Y, Badduke C, Mercier E, Lewis SM, Pavlidis P, Rajcan-Separovic E.

BMC Genomics. 2013 Aug 10;14:544. doi: 10.1186/1471-2164-14-544.

9.

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals.

Takane K, Fujishima K, Watanabe Y, Sato A, Saito N, Tomita M, Kanai A.

BMC Genomics. 2010 Feb 9;11:101. doi: 10.1186/1471-2164-11-101.

10.

A genome-wide survey of copy number variations in Han Chinese residing in Taiwan.

Lin CH, Lin YC, Wu JY, Pan WH, Chen YT, Fann CS.

Genomics. 2009 Oct;94(4):241-6. doi: 10.1016/j.ygeno.2009.06.004. Epub 2009 Jun 25.

11.

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis.

Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY.

Hum Mutat. 2012 Jan;33(1):254-63. doi: 10.1002/humu.21641. Epub 2011 Nov 23.

PMID:
22045659
12.

Evolution of Hox post-transcriptional regulation by alternative polyadenylation and microRNA modulation within 12 Drosophila genomes.

Patraquim P, Warnefors M, Alonso CR.

Mol Biol Evol. 2011 Sep;28(9):2453-60. doi: 10.1093/molbev/msr073. Epub 2011 Mar 24.

PMID:
21436120
13.

Computational approaches for microRNA studies: a review.

Li L, Xu J, Yang D, Tan X, Wang H.

Mamm Genome. 2010 Feb;21(1-2):1-12. doi: 10.1007/s00335-009-9241-2. Epub 2009 Dec 15. Review.

PMID:
20012966
14.

Prediction of microRNA targets.

Mazière P, Enright AJ.

Drug Discov Today. 2007 Jun;12(11-12):452-8. Epub 2007 Apr 26. Review.

PMID:
17532529
15.

Homo sapiens exhibit a distinct pattern of CNV genes regulation: an important role of miRNAs and SNPs in expression plasticity.

Dweep H, Kubikova N, Gretz N, Voskarides K, Felekkis K.

Sci Rep. 2015 Jul 16;5:12163. doi: 10.1038/srep12163.

16.

microRNAs in diseases: from candidate to modifier genes.

Bandiera S, Hatem E, Lyonnet S, Henrion-Caude A.

Clin Genet. 2010 Apr;77(4):306-13. doi: 10.1111/j.1399-0004.2010.01370.x. Epub 2010 Jan 5. Review.

PMID:
20132241
17.

Copy number variations in East-Asian population and their evolutionary and functional implications.

Yim SH, Kim TM, Hu HJ, Kim JH, Kim BJ, Lee JY, Han BG, Shin SH, Jung SH, Chung YJ.

Hum Mol Genet. 2010 Mar 15;19(6):1001-8. doi: 10.1093/hmg/ddp564. Epub 2009 Dec 21.

18.

Characterization of copy number-stable regions in the human genome.

Johansson AC, Feuk L.

Hum Mutat. 2011 Aug;32(8):947-55. doi: 10.1002/humu.21524. Epub 2011 Jul 20.

PMID:
21542059
19.

Selection and mutation on microRNA target sequences during rice evolution.

Guo X, Gui Y, Wang Y, Zhu QH, Helliwell C, Fan L.

BMC Genomics. 2008 Oct 2;9:454. doi: 10.1186/1471-2164-9-454.

20.

MicroRNA regulation and the variability of human cortical gene expression.

Zhang R, Su B.

Nucleic Acids Res. 2008 Aug;36(14):4621-8. doi: 10.1093/nar/gkn431. Epub 2008 Jul 10.

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