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Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.

López-Ramírez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Álvarez G.

J Mol Evol. 2011 Apr;72(4):413-31. doi: 10.1007/s00239-011-9441-8. Epub 2011 Mar 25.


Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera.

Steimer L, Wurm JP, Linden MH, Rudolph MG, Wöhnert J, Klostermeier D.

Nucleic Acids Res. 2013 Jul;41(12):6259-72. doi: 10.1093/nar/gkt323. Epub 2013 Apr 25.


Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii.

Lim J, Thomas T, Cavicchioli R.

J Mol Biol. 2000 Mar 31;297(3):553-67.


Putative DEAD and DExH-box RNA helicases families in Entamoeba histolytica.

Marchat LA, Orozco E, Guillen N, Weber C, López-Camarillo C.

Gene. 2008 Nov 15;424(1-2):1-10. doi: 10.1016/j.gene.2008.07.042. Epub 2008 Aug 9.


A structural model for the DEAD box helicase YxiN in solution: localization of the RNA binding domain.

Karow AR, Klostermeier D.

J Mol Biol. 2010 Oct 1;402(4):629-37. doi: 10.1016/j.jmb.2010.07.049. Epub 2010 Aug 5.


Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy.

Henn A, Medalia O, Shi SP, Steinberg M, Franceschi F, Sagi I.

Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):5007-12. Epub 2001 Apr 10.


Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA.

Pugh GE, Nicol SM, Fuller-Pace FV.

J Mol Biol. 1999 Oct 1;292(4):771-8.


Identification of a putative RNA helicase in E.coli.

Iggo R, Picksley S, Southgate J, McPheat J, Lane DP.

Nucleic Acids Res. 1990 Sep 25;18(18):5413-7.


The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core.

Rudolph MG, Klostermeier D.

RNA. 2009 Nov;15(11):1993-2001. doi: 10.1261/rna.1820009. Epub 2009 Aug 26.


DbpA: a DEAD box protein specifically activated by 23s rRNA.

Fuller-Pace FV, Nicol SM, Reid AD, Lane DP.

EMBO J. 1993 Sep;12(9):3619-26.


YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain.

Karginov FV, Caruthers JM, Hu Y, McKay DB, Uhlenbeck OC.

J Biol Chem. 2005 Oct 21;280(42):35499-505. Epub 2005 Aug 22.


The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity.

Linden MH, Hartmann RK, Klostermeier D.

Nucleic Acids Res. 2008 Oct;36(18):5800-11. doi: 10.1093/nar/gkn581. Epub 2008 Sep 9.


Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro.

Mohr G, Del Campo M, Mohr S, Yang Q, Jia H, Jankowsky E, Lambowitz AM.

J Mol Biol. 2008 Feb 1;375(5):1344-64. Epub 2007 Nov 22.


DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other.

Lehnik-Habrink M, Rempeters L, Kovács ÁT, Wrede C, Baierlein C, Krebber H, Kuipers OP, Stülke J.

J Bacteriol. 2013 Feb;195(3):534-44. doi: 10.1128/JB.01475-12. Epub 2012 Nov 21.


Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif.

Hardin JW, Hu YX, McKay DB.

J Mol Biol. 2010 Sep 17;402(2):412-27. doi: 10.1016/j.jmb.2010.07.040. Epub 2010 Jul 29.


Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity.

Böddeker N, Stade K, Franceschi F.

Nucleic Acids Res. 1997 Feb 1;25(3):537-45.


The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA.

Henn A, Cao W, Hackney DD, De La Cruz EM.

J Mol Biol. 2008 Mar 14;377(1):193-205. doi: 10.1016/j.jmb.2007.12.046. Epub 2007 Dec 28.


Time course of large ribosomal subunit assembly in E. coli cells overexpressing a helicase inactive DbpA protein.

Gentry RC, Childs JJ, Gevorkyan J, Gerasimova YV, Koculi E.

RNA. 2016 Jul;22(7):1055-64. doi: 10.1261/rna.055137.115. Epub 2016 May 18.

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