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Items: 1 to 20 of 131

1.

Dynamic evolution of base composition: causes and consequences in avian phylogenomics.

Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H.

Mol Biol Evol. 2011 Aug;28(8):2197-210. doi: 10.1093/molbev/msr047. Epub 2011 Apr 4.

2.

Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.

Weber CC, Boussau B, Romiguier J, Jarvis ED, Ellegren H.

Genome Biol. 2014;15(12):549.

3.

Molecular evolutionary genomics of birds.

Ellegren H.

Cytogenet Genome Res. 2007;117(1-4):120-30. Review.

PMID:
17675852
4.

Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.

Figuet E, Ballenghien M, Romiguier J, Galtier N.

Genome Biol Evol. 2014 Dec 19;7(1):240-50. doi: 10.1093/gbe/evu277.

5.

GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).

Muyle A, Serres-Giardi L, Ressayre A, Escobar J, Glémin S.

Mol Biol Evol. 2011 Sep;28(9):2695-706. doi: 10.1093/molbev/msr104. Epub 2011 Apr 18.

PMID:
21504892
6.

Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias.

Liu Y, Cox CJ, Wang W, Goffinet B.

Syst Biol. 2014 Nov;63(6):862-78. doi: 10.1093/sysbio/syu049. Epub 2014 Jul 28.

PMID:
25070972
7.

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System.

Bolívar P, Mugal CF, Nater A, Ellegren H.

Mol Biol Evol. 2016 Jan;33(1):216-27. doi: 10.1093/molbev/msv214. Epub 2015 Oct 6.

8.

Molecular evolution of genes in avian genomes.

Nam K, Mugal C, Nabholz B, Schielzeth H, Wolf JB, Backström N, Künstner A, Balakrishnan CN, Heger A, Ponting CP, Clayton DF, Ellegren H.

Genome Biol. 2010;11(6):R68. doi: 10.1186/gb-2010-11-6-r68. Epub 2010 Jun 23.

9.

Evidence from a house finch (Haemorhous mexicanus) spleen transcriptome for adaptive evolution and biased gene conversion in passerine birds.

Backström N, Zhang Q, Edwards SV.

Mol Biol Evol. 2013 May;30(5):1046-50. doi: 10.1093/molbev/mst033. Epub 2013 Feb 21.

PMID:
23429858
10.

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.

Romiguier J, Ranwez V, Delsuc F, Galtier N, Douzery EJ.

Mol Biol Evol. 2013 Sep;30(9):2134-44. doi: 10.1093/molbev/mst116. Epub 2013 Jun 29.

PMID:
23813978
11.

Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees.

Romiguier J, Cameron SA, Woodard SH, Fischman BJ, Keller L, Praz CJ.

Mol Biol Evol. 2016 Mar;33(3):670-8. doi: 10.1093/molbev/msv258. Epub 2015 Nov 17.

PMID:
26576851
12.

Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype.

Mugal CF, Arndt PF, Ellegren H.

Mol Biol Evol. 2013 Jul;30(7):1700-12. doi: 10.1093/molbev/mst067. Epub 2013 Apr 5.

13.

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders.

Pacheco MA, Battistuzzi FU, Lentino M, Aguilar RF, Kumar S, Escalante AA.

Mol Biol Evol. 2011 Jun;28(6):1927-42. doi: 10.1093/molbev/msr014. Epub 2011 Jan 17.

14.

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.

Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell DP.

BMC Biol. 2008 Jan 28;6:6. doi: 10.1186/1741-7007-6-6.

15.

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing.

McCormack JE, Harvey MG, Faircloth BC, Crawford NG, Glenn TC, Brumfield RT.

PLoS One. 2013;8(1):e54848. doi: 10.1371/journal.pone.0054848. Epub 2013 Jan 29.

16.

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing.

Prum RO, Berv JS, Dornburg A, Field DJ, Townsend JP, Lemmon EM, Lemmon AR.

Nature. 2015 Oct 22;526(7574):569-73. doi: 10.1038/nature15697. Epub 2015 Oct 7.

PMID:
26444237
17.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

18.

GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes.

Escobar JS, Glémin S, Galtier N.

Mol Biol Evol. 2011 Sep;28(9):2561-75. doi: 10.1093/molbev/msr079. Epub 2011 Mar 28.

PMID:
21444650
19.

Models for the evolution of GC content in asexual fungi Candida albicans and C. dubliniensis.

Marsolier-Kergoat MC.

Genome Biol Evol. 2013;5(11):2205-16. doi: 10.1093/gbe/evt170.

20.

Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous.

Harrison GL, McLenachan PA, Phillips MJ, Slack KE, Cooper A, Penny D.

Mol Biol Evol. 2004 Jun;21(6):974-83. Epub 2004 Jan 22.

PMID:
14739240

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