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A curated database of miRNA mediated feed-forward loops involving MYC as master regulator.

El Baroudi M, Corà D, Bosia C, Osella M, Caselle M.

PLoS One. 2011 Mar 3;6(3):e14742. doi: 10.1371/journal.pone.0014742.


Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human.

Re A, Corá D, Taverna D, Caselle M.

Mol Biosyst. 2009 Aug;5(8):854-67. doi: 10.1039/b900177h. Epub 2009 Jun 19.


Identification and analysis of the regulatory network of Myc and microRNAs from high-throughput experimental data.

Xiong L, Jiang W, Zhou R, Mao C, Guo Z.

Comput Biol Med. 2013 Sep;43(9):1252-60. doi: 10.1016/j.compbiomed.2013.06.002. Epub 2013 Jun 13.


CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.

Friard O, Re A, Taverna D, De Bortoli M, Corá D.

BMC Bioinformatics. 2010 Aug 23;11:435. doi: 10.1186/1471-2105-11-435.


MicroRNA regulation of a cancer network: consequences of the feedback loops involving miR-17-92, E2F, and Myc.

Aguda BD, Kim Y, Piper-Hunter MG, Friedman A, Marsh CB.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19678-83. doi: 10.1073/pnas.0811166106. Epub 2008 Dec 9.


Combinatorial network of transcriptional regulation and microRNA regulation in human cancer.

Yu H, Tu K, Wang YJ, Mao JZ, Xie L, Li YY, Li YX.

BMC Syst Biol. 2012 Jun 12;6:61. doi: 10.1186/1752-0509-6-61.


Modeling microRNA-transcription factor networks in cancer.

Aguda BD.

Adv Exp Med Biol. 2013;774:149-67. doi: 10.1007/978-94-007-5590-1_9. Review.


Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer.

Li K, Li Z, Zhao N, Xu Y, Liu Y, Zhou Y, Shang D, Qiu F, Zhang R, Chang Z, Xu Y.

BMC Syst Biol. 2013 Nov 7;7:122. doi: 10.1186/1752-0509-7-122.


Methods to quantify microRNAs in the Myc gene network for posttranscriptional gene repression.

Song R, Sponer N, He L.

Methods Mol Biol. 2013;1012:135-44. doi: 10.1007/978-1-62703-429-6_10.


MicroRNA-mediated positive feedback loop and optimized bistable switch in a cancer network Involving miR-17-92.

Li Y, Li Y, Zhang H, Chen Y.

PLoS One. 2011;6(10):e26302. doi: 10.1371/journal.pone.0026302. Epub 2011 Oct 14.


Reconstruction and analysis of transcription factor-miRNA co-regulatory feed-forward loops in human cancers using filter-wrapper feature selection.

Peng C, Wang M, Shen Y, Feng H, Li A.

PLoS One. 2013 Oct 29;8(10):e78197. doi: 10.1371/journal.pone.0078197. eCollection 2013.


A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes.

Riba A, Bosia C, El Baroudi M, Ollino L, Caselle M.

PLoS Comput Biol. 2014 Feb 27;10(2):e1003490. doi: 10.1371/journal.pcbi.1003490. eCollection 2014 Feb. Erratum in: PLoS Comput Biol. 2014 Mar;10(3):e1003582.


MYC, microRNAs and glutamine addiction in cancers.

Dang CV.

Cell Cycle. 2009 Oct 15;8(20):3243-5. Epub 2009 Oct 15.


A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.

Polioudakis D, Bhinge AA, Killion PJ, Lee BK, Abell NS, Iyer VR.

Nucleic Acids Res. 2013 Feb 1;41(4):2239-54. doi: 10.1093/nar/gks1452. Epub 2013 Jan 8.


Alteration of microRNAs regulated by c-Myc in Burkitt lymphoma.

Onnis A, De Falco G, Antonicelli G, Onorati M, Bellan C, Sherman O, Sayed S, Leoncini L.

PLoS One. 2010 Sep 24;5(9). pii: e12960. doi: 10.1371/journal.pone.0012960.


Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma.

Sun J, Gong X, Purow B, Zhao Z.

PLoS Comput Biol. 2012;8(7):e1002488. doi: 10.1371/journal.pcbi.1002488. Epub 2012 Jul 19.


c-Myc-regulated microRNAs modulate E2F1 expression.

O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT.

Nature. 2005 Jun 9;435(7043):839-43.


Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases.

Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY.

Brief Bioinform. 2015 Jan;16(1):45-58. doi: 10.1093/bib/bbt085. Epub 2013 Dec 4. Review.


'Traffic light rules': Chromatin states direct miRNA-mediated network motifs running by integrating epigenome and regulatome.

Zhao H, Zhang G, Pang L, Lan Y, Wang L, Yu F, Hu J, Li F, Zhao T, Xiao Y, Li X.

Biochim Biophys Acta. 2016 Jul;1860(7):1475-88. doi: 10.1016/j.bbagen.2016.04.008. Epub 2016 Apr 14.


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