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Chicken domestication: from archeology to genomics.

Tixier-Boichard M, Bed'hom B, Rognon X.

C R Biol. 2011 Mar;334(3):197-204. doi: 10.1016/j.crvi.2010.12.012. Review.


Establishing the validity of domestication genes using DNA from ancient chickens.

Girdland Flink L, Allen R, Barnett R, Malmström H, Peters J, Eriksson J, Andersson L, Dobney K, Larson G.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6184-9. doi: 10.1073/pnas.1308939110. Epub 2014 Apr 21.


Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken.

Kanginakudru S, Metta M, Jakati RD, Nagaraju J.

BMC Evol Biol. 2008 Jun 10;8:174. doi: 10.1186/1471-2148-8-174.


[Comparative analysis of morphologic traits in Mediterranean and Chinese chicken breeds. The problem of the origin of the domestic chicken].

Moiseeva IG, Chzhan IuG, Zakharov IA, Nikiforov AA.

Genetika. 1996 Nov;32(11):1553-61. Russian.


Whole-genome resequencing reveals loci under selection during chicken domestication.

Rubin CJ, Zody MC, Eriksson J, Meadows JR, Sherwood E, Webster MT, Jiang L, Ingman M, Sharpe T, Ka S, Hallböök F, Besnier F, Carlborg O, Bed'hom B, Tixier-Boichard M, Jensen P, Siegel P, Lindblad-Toh K, Andersson L.

Nature. 2010 Mar 25;464(7288):587-91. doi: 10.1038/nature08832. Epub 2010 Mar 10.


Chicken domestication: an updated perspective based on mitochondrial genomes.

Miao YW, Peng MS, Wu GS, Ouyang YN, Yang ZY, Yu N, Liang JP, Pianchou G, Beja-Pereira A, Mitra B, Palanichamy MG, Baig M, Chaudhuri TK, Shen YY, Kong QP, Murphy RW, Yao YG, Zhang YP.

Heredity (Edinb). 2013 Mar;110(3):277-82. doi: 10.1038/hdy.2012.83. Epub 2012 Dec 5.


ChickVD: a sequence variation database for the chicken genome.

Wang J, He X, Ruan J, Dai M, Chen J, Zhang Y, Hu Y, Ye C, Li S, Cong L, Fang L, Liu B, Li S, Wang J, Burt DW, Wong GK, Yu J, Yang H, Wang J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D438-41.


Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA.

Larson G, Liu R, Zhao X, Yuan J, Fuller D, Barton L, Dobney K, Fan Q, Gu Z, Liu XH, Luo Y, Lv P, Andersson L, Li N.

Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7686-91. doi: 10.1073/pnas.0912264107. Epub 2010 Apr 19.


Gastrocnemius transcriptome analysis reveals domestication induced gene expression changes between wild and domestic chickens.

Li Q, Wang N, Du Z, Hu X, Chen L, Fei J, Wang Y, Li N.

Genomics. 2012 Nov;100(5):314-9. doi: 10.1016/j.ygeno.2012.07.008. Epub 2012 Jul 21.


Early Holocene chicken domestication in northern China.

Xiang H, Gao J, Yu B, Zhou H, Cai D, Zhang Y, Chen X, Wang X, Hofreiter M, Zhao X.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17564-9. doi: 10.1073/pnas.1411882111. Epub 2014 Nov 24.


The origin and genetic diversity of Chinese native chicken breeds.

Niu D, Fu Y, Luo J, Ruan H, Yu XP, Chen G, Zhang YP.

Biochem Genet. 2002 Jun;40(5-6):163-74.


A domestication related mutation in the thyroid stimulating hormone receptor gene (TSHR) modulates photoperiodic response and reproduction in chickens.

Karlsson AC, Fallahshahroudi A, Johnsen H, Hagenblad J, Wright D, Andersson L, Jensen P.

Gen Comp Endocrinol. 2016 Mar 1;228:69-78. doi: 10.1016/j.ygcen.2016.02.010. Epub 2016 Feb 9.


DNA reveals how the chicken crossed the sea.

Borrell B.

Nature. 2007 Jun 7;447(7145):620-1. No abstract available.


One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds.

Fumihito A, Miyake T, Sumi S, Takada M, Ohno S, Kondo N.

Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12505-9.


Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken.

Eriksson J, Larson G, Gunnarsson U, Bed'hom B, Tixier-Boichard M, Strömstedt L, Wright D, Jungerius A, Vereijken A, Randi E, Jensen P, Andersson L.

PLoS Genet. 2008 Feb 29;4(2):e1000010. doi: 10.1371/journal.pgen.1000010.


Genome-wide patterns of genetic variation in two domestic chickens.

Fan WL, Ng CS, Chen CF, Lu MY, Chen YH, Liu CJ, Wu SM, Chen CK, Chen JJ, Mao CT, Lai YT, Lo WS, Chang WH, Li WH.

Genome Biol Evol. 2013;5(7):1376-92. doi: 10.1093/gbe/evt097.


Widespread origins of domestic horse lineages.

Vilà C, Leonard JA, Gotherstrom A, Marklund S, Sandberg K, Liden K, Wayne RK, Ellegren H.

Science. 2001 Jan 19;291(5503):474-7.


Reduced variation on the chicken Z chromosome.

Sundström H, Webster MT, Ellegren H.

Genetics. 2004 May;167(1):377-85.


Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination.

Mugal CF, Nabholz B, Ellegren H.

BMC Genomics. 2013 Feb 8;14:86. doi: 10.1186/1471-2164-14-86.


The origin and genetic variation of domestic chickens with special reference to junglefowls Gallus g. gallus and G. varius.

Sawai H, Kim HL, Kuno K, Suzuki S, Gotoh H, Takada M, Takahata N, Satta Y, Akishinonomiya F.

PLoS One. 2010 May 19;5(5):e10639. doi: 10.1371/journal.pone.0010639.

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