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Items: 1 to 20 of 116

1.

Comprehensive cluster analysis with Transitivity Clustering.

Wittkop T, Emig D, Truss A, Albrecht M, Böcker S, Baumbach J.

Nat Protoc. 2011 Mar;6(3):285-95. doi: 10.1038/nprot.2010.197. Epub 2011 Feb 10.

PMID:
21372810
2.

ProClust: improved clustering of protein sequences with an extended graph-based approach.

Pipenbacher P, Schliep A, Schneckener S, Schönhuth A, Schomburg D, Schrader R.

Bioinformatics. 2002;18 Suppl 2:S182-91.

PMID:
12386002
3.

Computational method for temporal pattern discovery in biomedical genomic databases.

Rafiq MI, O'Connor MJ, Das AK.

Proc IEEE Comput Syst Bioinform Conf. 2005:362-5.

PMID:
16447993
4.

CD-HIT Suite: a web server for clustering and comparing biological sequences.

Huang Y, Niu B, Gao Y, Fu L, Li W.

Bioinformatics. 2010 Mar 1;26(5):680-2. doi: 10.1093/bioinformatics/btq003. Epub 2010 Jan 6.

5.

The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.

Rampp M, Soddemann T, Lederer H.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W15-9.

6.

WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.

Mignone F, Horner DS, Pesole G.

Bioinformatics. 2004 May 22;20(8):1331-3. Epub 2004 Feb 10.

PMID:
14871863
7.

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Xiang Z, Qin ZS, He Y.

Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.

PMID:
17485426
8.

jClust: a clustering and visualization toolbox.

Pavlopoulos GA, Moschopoulos CN, Hooper SD, Schneider R, Kossida S.

Bioinformatics. 2009 Aug 1;25(15):1994-6. doi: 10.1093/bioinformatics/btp330. Epub 2009 May 19.

9.

Using MUMmer to identify similar regions in large sequence sets.

Delcher AL, Salzberg SL, Phillippy AM.

Curr Protoc Bioinformatics. 2003 Feb;Chapter 10:Unit 10.3. doi: 10.1002/0471250953.bi1003s00.

PMID:
18428693
10.

wEMBOSS: a web interface for EMBOSS.

Sarachu M, Colet M.

Bioinformatics. 2005 Feb 15;21(4):540-1. Epub 2004 Sep 23.

PMID:
15388516
11.

INCA: synonymous codon usage analysis and clustering by means of self-organizing map.

Supek F, Vlahovicek K.

Bioinformatics. 2004 Sep 22;20(14):2329-30. Epub 2004 Apr 1.

PMID:
15059815
12.

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences.

Hindemitt T, Mayer KF.

Bioinformatics. 2005 Dec 1;21(23):4304-6. Epub 2005 Oct 4.

PMID:
16204349
13.

The CRASSS plug-in for integrating annotation data with hierarchical clustering results.

Buehler EC, Sachs JR, Shao K, Bagchi A, Ungar LH.

Bioinformatics. 2004 Nov 22;20(17):3266-9. Epub 2004 Jun 16.

PMID:
15201188
14.

Towards clustering of incomplete microarray data without the use of imputation.

Kim DW, Lee KY, Lee KH, Lee D.

Bioinformatics. 2007 Jan 1;23(1):107-13. Epub 2006 Oct 31.

PMID:
17077099
15.

SWeBLAST: a Sliding Window Web-based BLAST tool for recombinant analysis.

Fourment M, Gibbs AJ, Gibbs MJ.

J Virol Methods. 2008 Sep;152(1-2):98-101. doi: 10.1016/j.jviromet.2008.06.009. Epub 2008 Jul 17.

PMID:
18602951
16.

KDE Bioscience: platform for bioinformatics analysis workflows.

Lu Q, Hao P, Curcin V, He W, Li YY, Luo QM, Guo YK, Li YX.

J Biomed Inform. 2006 Aug;39(4):440-50. Epub 2005 Oct 11.

17.

Biosphere: the interoperation of web services in microarray cluster analysis.

Cheung KH, de Knikker R, Guo Y, Zhong G, Hager J, Yip KY, Kwan AK, Li P, Cheung DW.

Appl Bioinformatics. 2004;3(4):253-6.

PMID:
15702956
18.

Visualization methods for statistical analysis of microarray clusters.

Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

BMC Bioinformatics. 2005 May 12;6:115.

19.

ESTminer: a Web interface for mining EST contig and cluster databases.

Huang Y, Pumphrey J, Gingle AR.

Bioinformatics. 2005 Mar 1;21(5):669-70. Epub 2004 Sep 16.

PMID:
15374864
20.

AntiClustal: Multiple Sequence Alignment by antipole clustering and linear approximate 1-median computation.

Di Pietro C, Di Pietro V, Emmanuele G, Ferro A, Maugeri T, Modica E, Pigola G, Pulvirenti A, Purrello M, Ragusa M, Scalia M, Shasha D, Travali S, Zimmitti V.

Proc IEEE Comput Soc Bioinform Conf. 2003;2:326-36.

PMID:
16452808

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