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Items: 1 to 20 of 75

1.

Efficient study design for next generation sequencing.

Sampson J, Jacobs K, Yeager M, Chanock S, Chatterjee N.

Genet Epidemiol. 2011 May;35(4):269-77.

2.

Analysis and optimal design for association studies using next-generation sequencing with case-control pools.

Liang WE, Thomas DC, Conti DV.

Genet Epidemiol. 2012 Dec;36(8):870-81. doi: 10.1002/gepi.21681. Epub 2012 Sep 12.

3.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

4.

Low-, high-coverage, and two-stage DNA sequencing in the design of the genetic association study.

Xu C, Wu K, Zhang JG, Shen H, Deng HW.

Genet Epidemiol. 2017 Apr;41(3):187-197. doi: 10.1002/gepi.22015. Epub 2016 Nov 4.

PMID:
27813156
5.
6.
7.

On optimal pooling designs to identify rare variants through massive resequencing.

Lee JS, Choi M, Yan X, Lifton RP, Zhao H.

Genet Epidemiol. 2011 Apr;35(3):139-47. doi: 10.1002/gepi.20561. Epub 2011 Jan 19.

8.

Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association.

Shen Y, Song R, Pe'er I.

Bioinformatics. 2011 Jul 15;27(14):1995-7. doi: 10.1093/bioinformatics/btr305. Epub 2011 Jun 2.

9.

Optimal sequencing strategies for identifying disease-associated singletons.

Rashkin S, Jun G, Chen S; Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO), Abecasis GR.

PLoS Genet. 2017 Jun 22;13(6):e1006811. doi: 10.1371/journal.pgen.1006811. eCollection 2017 Jun.

10.

Identification of causal sequence variants of disease in the next generation sequencing era.

Kingsley CB.

Methods Mol Biol. 2011;700:37-46. doi: 10.1007/978-1-61737-954-3_3. Review.

PMID:
21204025
11.

Implication of next-generation sequencing on association studies.

Siu H, Zhu Y, Jin L, Xiong M.

BMC Genomics. 2011 Jun 17;12:322. doi: 10.1186/1471-2164-12-322.

12.

Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment.

Berglund EC, Lindqvist CM, Hayat S, Övernäs E, Henriksson N, Nordlund J, Wahlberg P, Forestier E, Lönnerholm G, Syvänen AC.

BMC Genomics. 2013 Dec 5;14:856. doi: 10.1186/1471-2164-14-856.

13.

Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers.

Cao CC, Li C, Sun X.

BMC Bioinformatics. 2014 Jun 17;15:195. doi: 10.1186/1471-2105-15-195.

14.

Rare variant association testing under low-coverage sequencing.

Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E.

Genetics. 2013 Jul;194(3):769-79. doi: 10.1534/genetics.113.150169. Epub 2013 May 1.

15.

Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling.

Marroni F, Pinosio S, Di Centa E, Jurman I, Boerjan W, Felice N, Cattonaro F, Morgante M.

Plant J. 2011 Aug;67(4):736-45. doi: 10.1111/j.1365-313X.2011.04627.x. Epub 2011 Jul 11. Erratum in: Plant J. 2012 Feb;69(3):564.

16.

Resequencing of pooled DNA for detecting disease associations with rare variants.

Wang T, Lin CY, Rohan TE, Ye K.

Genet Epidemiol. 2010 Jul;34(5):492-501. doi: 10.1002/gepi.20502.

17.

A sample selection strategy for next-generation sequencing.

Kang CJ, Marjoram P.

Genet Epidemiol. 2012 Nov;36(7):696-709. doi: 10.1002/gepi.21664. Epub 2012 Aug 3.

18.

Use of linkage analysis, genome-wide association studies, and next-generation sequencing in the identification of disease-causing mutations.

Londin E, Yadav P, Surrey S, Kricka LJ, Fortina P.

Methods Mol Biol. 2013;1015:127-46. doi: 10.1007/978-1-62703-435-7_8.

PMID:
23824853
19.

A novel genome-information content-based statistic for genome-wide association analysis designed for next-generation sequencing data.

Luo L, Zhu Y, Xiong M.

J Comput Biol. 2012 Jun;19(6):731-44. doi: 10.1089/cmb.2012.0035. Epub 2012 May 31.

20.

Low-coverage sequencing: implications for design of complex trait association studies.

Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR.

Genome Res. 2011 Jun;21(6):940-51. doi: 10.1101/gr.117259.110. Epub 2011 Apr 1.

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