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Items: 1 to 20 of 146

1.

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran C, Ling EY, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M, Kubaláková M, Šimková H, Batley J, Fleury D, Doležel J, Edwards D.

Plant Biotechnol J. 2011 Sep;9(7):768-75. doi: 10.1111/j.1467-7652.2010.00587.x. Epub 2011 Feb 28.

2.

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation.

Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubaláková M, Simková H, Batley J, Doležel J, Hernandez P, Edwards D.

Theor Appl Genet. 2012 Feb;124(3):423-32. doi: 10.1007/s00122-011-1717-2. Epub 2011 Oct 15.

PMID:
22001910
3.

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.

Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.

Plant J. 2015 Nov;84(4):733-46. doi: 10.1111/tpj.13036.

4.

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content.

Hernandez P, Martis M, Dorado G, Pfeifer M, Gálvez S, Schaaf S, Jouve N, Šimková H, Valárik M, Doležel J, Mayer KF.

Plant J. 2012 Feb;69(3):377-86. doi: 10.1111/j.1365-313X.2011.04808.x. Epub 2011 Nov 25.

5.

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat.

Sehgal SK, Li W, Rabinowicz PD, Chan A, Simková H, Doležel J, Gill BS.

BMC Plant Biol. 2012 May 4;12:64. doi: 10.1186/1471-2229-12-64.

6.

Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation.

Bossolini E, Wicker T, Knobel PA, Keller B.

Plant J. 2007 Feb;49(4):704-17. Epub 2007 Jan 18. Erratum in: Plant J. 2007 Jun;50(6):1129.

7.

Sequence and analysis of rice chromosome 4.

Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.

Nature. 2002 Nov 21;420(6913):316-20.

PMID:
12447439
8.

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.

Bartoš J, Vlček C, Choulet F, Džunková M, Cviková K, Safář J, Simková H, Pačes J, Strnad H, Sourdille P, Bergès H, Cattonaro F, Feuillet C, Doležel J.

BMC Plant Biol. 2012 Aug 30;12:155.

9.

Development of chromosome-specific BAC resources for genomics of bread wheat.

Safár J, Simková H, Kubaláková M, Cíhalíková J, Suchánková P, Bartos J, Dolezel J.

Cytogenet Genome Res. 2010 Jul;129(1-3):211-23. doi: 10.1159/000313072. Epub 2010 May 26.

PMID:
20501977
10.

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block.

Breen J, Wicker T, Kong X, Zhang J, Ma W, Paux E, Feuillet C, Appels R, Bellgard M.

BMC Plant Biol. 2010 May 27;10:98. doi: 10.1186/1471-2229-10-98.

11.
12.

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.

Wicker T, Mayer KF, Gundlach H, Martis M, Steuernagel B, Scholz U, Simková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Dolezel J, Keller B, Stein N.

Plant Cell. 2011 May;23(5):1706-18. doi: 10.1105/tpc.111.086629. Epub 2011 May 27.

13.

A physical map of the 1-gigabase bread wheat chromosome 3B.

Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudah E, Somers D, Kilian A, Alaux M, Vautrin S, Bergès H, Eversole K, Appels R, Safar J, Simkova H, Dolezel J, Bernard M, Feuillet C.

Science. 2008 Oct 3;322(5898):101-4. doi: 10.1126/science.1161847.

14.

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.

Rustenholz C, Choulet F, Laugier C, Safár J, Simková H, Dolezel J, Magni F, Scalabrin S, Cattonaro F, Vautrin S, Bellec A, Bergès H, Feuillet C, Paux E.

Plant Physiol. 2011 Dec;157(4):1596-608. doi: 10.1104/pp.111.183921. Epub 2011 Oct 27.

15.

Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.

Paux E, Roger D, Badaeva E, Gay G, Bernard M, Sourdille P, Feuillet C.

Plant J. 2006 Nov;48(3):463-74. Epub 2006 Sep 29.

16.

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Staňková H, Hastie AR, Chan S, Vrána J, Tulpová Z, Kubaláková M, Visendi P, Hayashi S, Luo M, Batley J, Edwards D, Doležel J, Šimková H.

Plant Biotechnol J. 2016 Jul;14(7):1523-31. doi: 10.1111/pbi.12513. Epub 2016 Jan 23.

17.

First survey of the wheat chromosome 5A composition through a next generation sequencing approach.

Vitulo N, Albiero A, Forcato C, Campagna D, Dal Pero F, Bagnaresi P, Colaiacovo M, Faccioli P, Lamontanara A, Šimková H, Kubaláková M, Perrotta G, Facella P, Lopez L, Pietrella M, Gianese G, Doležel J, Giuliano G, Cattivelli L, Valle G, Stanca AM.

PLoS One. 2011;6(10):e26421. doi: 10.1371/journal.pone.0026421. Epub 2011 Oct 18.

18.

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.

International Wheat Genome Sequencing Consortium (IWGSC).

Science. 2014 Jul 18;345(6194):1251788. doi: 10.1126/science.1251788.

19.

The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice.

Qi L, Friebe B, Wu J, Gu Y, Qian C, Gill BS.

Funct Integr Genomics. 2010 Nov;10(4):477-92. doi: 10.1007/s10142-010-0190-3. Epub 2010 Sep 15.

PMID:
20842403
20.

High-density mapping and comparative analysis of agronomically important traits on wheat chromosome 3A.

Dilbirligi M, Erayman M, Campbell BT, Randhawa HS, Baenziger PS, Dweikat I, Gill KS.

Genomics. 2006 Jul;88(1):74-87. Epub 2006 Apr 19.

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