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Items: 1 to 20 of 67

1.

Ab initio modeling led annotation suggests nucleic acid binding function for many DUFs.

Rigden DJ.

OMICS. 2011 Jul-Aug;15(7-8):431-8. doi: 10.1089/omi.2010.0122. Epub 2011 Feb 24.

PMID:
21348639
2.

Prediction of protein function from protein sequence and structure.

Whisstock JC, Lesk AM.

Q Rev Biophys. 2003 Aug;36(3):307-40. Review.

PMID:
15029827
3.

The extended left-handed helix: a simple nucleic acid-binding motif.

Hicks JM, Hsu VL.

Proteins. 2004 May 1;55(2):330-8.

PMID:
15048824
4.

Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.

PMID:
14579359
5.

Functional inferences from blind ab initio protein structure predictions.

Bonneau R, Tsai J, Ruczinski I, Baker D.

J Struct Biol. 2001 May-Jun;134(2-3):186-90. Review.

PMID:
11551178
6.

De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.

Mudgal R, Sandhya S, Chandra N, Srinivasan N.

Biol Direct. 2015 Jul 31;10:38. doi: 10.1186/s13062-015-0069-2.

7.

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D.

Proteins. 2001;Suppl 5:119-26.

PMID:
11835488
8.

Protein domains of unknown function are essential in bacteria.

Goodacre NF, Gerloff DL, Uetz P.

MBio. 2013 Dec 31;5(1):e00744-13. doi: 10.1128/mBio.00744-13.

9.
11.

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

Bromberg Y, Yachdav G, Ofran Y, Schneider R, Rost B.

Curr Opin Drug Discov Devel. 2009 May;12(3):408-19. Review.

PMID:
19396742
12.

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong L, Ranganathan S.

Brief Bioinform. 2004 Jun;5(2):179-92.

PMID:
15260897
13.

Characterization of alpha helices interacting with nucleic acids.

Sreekanth R, Pattabhi V, Rajan SS.

Comput Biol Chem. 2008 Oct;32(5):378-81. doi: 10.1016/j.compbiolchem.2008.06.002. Epub 2008 Jul 1.

PMID:
18667362
15.

Searching for hypothetical proteins: theory and practice based upon original data and literature.

Lubec G, Afjehi-Sadat L, Yang JW, John JP.

Prog Neurobiol. 2005 Sep-Oct;77(1-2):90-127. Epub 2005 Nov 4. Review.

PMID:
16271823
16.
18.

Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.

Margelevicius M, Venclovas C.

BMC Bioinformatics. 2010 Feb 17;11:89. doi: 10.1186/1471-2105-11-89.

19.

The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam.

Goonesekere NC, Shipely K, O'Connor K.

Comput Biol Chem. 2010 Jun;34(3):210-4. doi: 10.1016/j.compbiolchem.2010.04.001. Epub 2010 May 26.

PMID:
20537955
20.

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Wright PE, Dyson HJ.

J Mol Biol. 1999 Oct 22;293(2):321-31. Review.

PMID:
10550212

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