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Items: 1 to 20 of 88

1.

Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.

Blahnik KR, Dou L, Echipare L, Iyengar S, O'Geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ.

PLoS One. 2011 Feb 15;6(2):e17121. doi: 10.1371/journal.pone.0017121.

2.

Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks.

Hahn MA, Wu X, Li AX, Hahn T, Pfeifer GP.

PLoS One. 2011 Apr 19;6(4):e18844. doi: 10.1371/journal.pone.0018844.

3.

ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.

Valle-García D, Qadeer ZA, McHugh DS, Ghiraldini FG, Chowdhury AH, Hasson D, Dyer MA, Recillas-Targa F, Bernstein E.

Epigenetics. 2016 Jun 2;11(6):398-414. doi: 10.1080/15592294.2016.1169351. Epub 2016 Mar 30.

4.

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.

Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ.

PLoS One. 2010 Dec 8;5(12):e15082. doi: 10.1371/journal.pone.0015082.

5.

Coordinate H3K9 and DNA methylation silencing of ZNFs in toxicant-induced malignant transformation.

Severson PL, Tokar EJ, Vrba L, Waalkes MP, Futscher BW.

Epigenetics. 2013 Oct;8(10):1080-8. doi: 10.4161/epi.25926. Epub 2013 Aug 6.

6.

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ.

PLoS Genet. 2007 Jun;3(6):e89. Epub 2007 Apr 19.

7.

Differential chromatin marking of introns and expressed exons by H3K36me3.

Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J.

Nat Genet. 2009 Mar;41(3):376-81. doi: 10.1038/ng.322. Epub 2009 Feb 1.

8.

Promoter-exon relationship of H3 lysine 9, 27, 36 and 79 methylation on pluripotency-associated genes.

Barrand S, Andersen IS, Collas P.

Biochem Biophys Res Commun. 2010 Oct 29;401(4):611-7. doi: 10.1016/j.bbrc.2010.09.116. Epub 2010 Oct 18.

PMID:
20920475
9.

Discovery and annotation of functional chromatin signatures in the human genome.

Hon G, Wang W, Ren B.

PLoS Comput Biol. 2009 Nov;5(11):e1000566. doi: 10.1371/journal.pcbi.1000566. Epub 2009 Nov 13.

10.

The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis.

Veiseth SV, Rahman MA, Yap KL, Fischer A, Egge-Jacobsen W, Reuter G, Zhou MM, Aalen RB, Thorstensen T.

PLoS Genet. 2011 Mar;7(3):e1001325. doi: 10.1371/journal.pgen.1001325. Epub 2011 Mar 10.

11.

Functional analysis of KAP1 genomic recruitment.

Iyengar S, Ivanov AV, Jin VX, Rauscher FJ 3rd, Farnham PJ.

Mol Cell Biol. 2011 May;31(9):1833-47. doi: 10.1128/MCB.01331-10. Epub 2011 Feb 22.

12.

Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia.

Müller-Tidow C, Klein HU, Hascher A, Isken F, Tickenbrock L, Thoennissen N, Agrawal-Singh S, Tschanter P, Disselhoff C, Wang Y, Becker A, Thiede C, Ehninger G, zur Stadt U, Koschmieder S, Seidl M, Müller FU, Schmitz W, Schlenke P, McClelland M, Berdel WE, Dugas M, Serve H; Study Alliance Leukemia.

Blood. 2010 Nov 4;116(18):3564-71. doi: 10.1182/blood-2009-09-240978. Epub 2010 May 24.

13.
14.

H2B monoubiquitylation is a 5'-enriched active transcription mark and correlates with exon-intron structure in human cells.

Jung I, Kim SK, Kim M, Han YM, Kim YS, Kim D, Lee D.

Genome Res. 2012 Jun;22(6):1026-35. doi: 10.1101/gr.120634.111. Epub 2012 Mar 15.

15.

First exon length controls active chromatin signatures and transcription.

Bieberstein NI, Carrillo Oesterreich F, Straube K, Neugebauer KM.

Cell Rep. 2012 Jul 26;2(1):62-8. doi: 10.1016/j.celrep.2012.05.019. Epub 2012 Jul 20.

16.

Cloning and characterization of a novel zinc finger gene in Xp11.2.

Derry JM, Jess U, Francke U.

Genomics. 1995 Nov 20;30(2):361-5.

PMID:
8586441
17.

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite.

Buard J, Rivals E, Dunoyer de Segonzac D, Garres C, Caminade P, de Massy B, Boursot P.

PLoS One. 2014 Jan 13;9(1):e85021. doi: 10.1371/journal.pone.0085021. eCollection 2014.

18.

Comparative analyses of histone H3K9 trimethylations in the heart and spleen of normal humans.

Sui W, Cao C, Che W, Chen J, Xue W, Liu P, Guo L, Dai Y.

Genet Mol Res. 2014 Mar 17;13(1):1697-706. doi: 10.4238/2014.January.14.5.

19.

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm.

Wu SF, Zhang H, Cairns BR.

Genome Res. 2011 Apr;21(4):578-89. doi: 10.1101/gr.113167.110. Epub 2011 Mar 7.

20.

Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis.

Liu H, Jin T, Guan J, Zhou S.

BMC Genomics. 2014 Dec 19;15:1148. doi: 10.1186/1471-2164-15-1148.

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