Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 64

1.

A minimal descriptor of an ancestral recombinations graph.

Parida L, Palamara PF, Javed A.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S6. doi: 10.1186/1471-2105-12-S1-S6.

2.
3.

The number of recombination events in a sample history: conflict graph and lower bounds.

Bafna V, Bansal V.

IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun;1(2):78-90.

PMID:
17048383
4.

A Resolution of the Static Formulation Question for the Problem of Computing the History Bound.

Matsieva J, Kelk S, Scornavacca C, Whidden C, Gusfield D.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):404-417. doi: 10.1109/TCBB.2016.2527645. Epub 2016 Feb 11.

PMID:
26887004
5.

The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy.

Lam F, Tarpine R, Istrail S.

J Comput Biol. 2010 Jun;17(6):767-81. doi: 10.1089/cmb.2009.0249.

PMID:
20583925
6.

Association mapping of complex diseases with ancestral recombination graphs: models and efficient algorithms.

Wu Y.

J Comput Biol. 2008 Sep;15(7):667-84. doi: 10.1089/cmb.2007.0116.

PMID:
18651799
7.

Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns.

Parida L, Melé M, Calafell F, Bertranpetit J; Genographic Consortium.

J Comput Biol. 2008 Nov;15(9):1133-54. doi: 10.1089/cmb.2008.0065.

PMID:
18844583
8.

Nonredundant representation of ancestral recombinations graphs.

Parida L.

Methods Mol Biol. 2012;856:315-32. doi: 10.1007/978-1-61779-585-5_13.

PMID:
22399465
9.

A Consensus Method for Ancestral Recombination Graphs.

Kuhner MK, Yamato J.

J Mol Evol. 2017 Mar;84(2-3):129-138. doi: 10.1007/s00239-017-9786-8. Epub 2017 Mar 11.

PMID:
28285392
10.

The PNarec method for detection of ancient recombinations through phylogenetic network analysis.

Saitou N, Kitano T.

Mol Phylogenet Evol. 2013 Feb;66(2):507-14. doi: 10.1016/j.ympev.2012.09.015. Epub 2012 Sep 25.

PMID:
23022140
11.

IRiS: construction of ARG networks at genomic scales.

Javed A, Pybus M, Melé M, Utro F, Bertranpetit J, Calafell F, Parida L.

Bioinformatics. 2011 Sep 1;27(17):2448-50. doi: 10.1093/bioinformatics/btr423. Epub 2011 Jul 15.

PMID:
21765095
12.

A new method for modeling coalescent processes with recombination.

Wang Y, Zhou Y, Li L, Chen X, Liu Y, Ma ZM, Xu S.

BMC Bioinformatics. 2014 Aug 11;15:273. doi: 10.1186/1471-2105-15-273.

13.

The SMC' is a highly accurate approximation to the ancestral recombination graph.

Wilton PR, Carmi S, Hobolth A.

Genetics. 2015 May;200(1):343-55. doi: 10.1534/genetics.114.173898. Epub 2015 Mar 17.

14.

Mapping trait loci by use of inferred ancestral recombination graphs.

Minichiello MJ, Durbin R.

Am J Hum Genet. 2006 Nov;79(5):910-22. Epub 2006 Sep 27.

15.

Optimal, efficient reconstruction of phylogenetic networks with constrained recombination.

Gusfield D, Eddhu S, Langley C.

J Bioinform Comput Biol. 2004 Mar;2(1):173-213.

PMID:
15272438
16.

Genome-wide inference of ancestral recombination graphs.

Rasmussen MD, Hubisz MJ, Gronau I, Siepel A.

PLoS Genet. 2014 May 15;10(5):e1004342. doi: 10.1371/journal.pgen.1004342. eCollection 2014.

17.

Sampling ARG of multiple populations under complex configurations of subdivision and admixture.

Carrieri AP, Utro F, Parida L.

Bioinformatics. 2016 Apr 1;32(7):1048-56. doi: 10.1093/bioinformatics/btv716. Epub 2015 Dec 7.

PMID:
26644417
18.

Minimal conflicting sets for the consecutive ones property in ancestral genome reconstruction.

Chauve C, Hausd UU, Stephen T, You VP.

J Comput Biol. 2010 Sep;17(9):1167-81. doi: 10.1089/cmb.2010.0113.

PMID:
20874402
19.

Minimizing recombinations in consensus networks for phylogeographic studies.

Parida L, Javed A, Melé M, Calafell F, Bertranpetit J; Genographic Consortium.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S72. doi: 10.1186/1471-2105-10-S1-S72.

20.

Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome.

Platt DE, Utro F, Parida L.

Comput Biol Chem. 2014 Jun;50:68-74. doi: 10.1016/j.compbiolchem.2014.01.007. Epub 2014 Jan 23.

PMID:
24525375

Supplemental Content

Support Center