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Items: 1 to 20 of 463

1.

HDX-analyzer: a novel package for statistical analysis of protein structure dynamics.

Liu S, Liu L, Uzuner U, Zhou X, Gu M, Shi W, Zhang Y, Dai SY, Yuan JS.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S43. doi: 10.1186/1471-2105-12-S1-S43.

2.

Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing.

Zhang Z, Zhang A, Xiao G.

Anal Chem. 2012 Jun 5;84(11):4942-9. doi: 10.1021/ac300535r. Epub 2012 May 15.

PMID:
22571272
3.

The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.

Pascal BD, Chalmers MJ, Busby SA, Mader CC, Southern MR, Tsinoremas NF, Griffin PR.

BMC Bioinformatics. 2007 May 16;8:156.

4.

Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Slysz GW, Baker CA, Bozsa BM, Dang A, Percy AJ, Bennett M, Schriemer DC.

BMC Bioinformatics. 2009 May 27;10:162. doi: 10.1186/1471-2105-10-162.

6.

Enzyme structure dynamics of xylanase I from Trichoderma longibrachiatum.

Uzuner U, Shi W, Liu L, Liu S, Dai SY, Yuan JS.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S12. doi: 10.1186/1471-2105-11-S6-S12.

7.

HDX workbench: software for the analysis of H/D exchange MS data.

Pascal BD, Willis S, Lauer JL, Landgraf RR, West GM, Marciano D, Novick S, Goswami D, Chalmers MJ, Griffin PR.

J Am Soc Mass Spectrom. 2012 Sep;23(9):1512-21. doi: 10.1007/s13361-012-0419-6. Epub 2012 Jun 13.

8.

QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure.

Salisbury JP, Liu Q, Agar JN.

BMC Bioinformatics. 2014 Dec 11;15:403. doi: 10.1186/s12859-014-0403-1.

9.

HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments.

Petrotchenko EV, Borchers CH.

J Am Soc Mass Spectrom. 2015 Nov;26(11):1895-8. doi: 10.1007/s13361-015-1213-z. Epub 2015 Jul 11.

PMID:
26162650
10.

Type 1 and Type 2 scenarios in hydrogen exchange mass spectrometry studies on protein-ligand complexes.

Konermann L, Rodriguez AD, Sowole MA.

Analyst. 2014 Dec 7;139(23):6078-87. doi: 10.1039/c4an01307g. Review.

PMID:
25319399
11.

Feature based retention time alignment for improved HDX MS analysis.

Venable JD, Scuba W, Brock A.

J Am Soc Mass Spectrom. 2013 Apr;24(4):642-5. doi: 10.1007/s13361-012-0566-9. Epub 2013 Feb 22.

PMID:
23430702
12.

Conformational analysis of g protein-coupled receptor signaling by hydrogen/deuterium exchange mass spectrometry.

Li S, Lee SY, Chung KY.

Methods Enzymol. 2015;557:261-78. doi: 10.1016/bs.mie.2014.12.004. Epub 2015 Mar 29.

PMID:
25950969
13.

Mapping Protein-Ligand Interactions with Proteolytic Fragmentation, Hydrogen/Deuterium Exchange-Mass Spectrometry.

Gallagher ES, Hudgens JW.

Methods Enzymol. 2016;566:357-404. doi: 10.1016/bs.mie.2015.08.010. Epub 2015 Oct 23.

PMID:
26791987
14.

Localizing flexible regions in proteins using hydrogen-deuterium exchange mass spectrometry.

Bobst CE, Kaltashov IA.

Methods Mol Biol. 2012;896:375-85. doi: 10.1007/978-1-4614-3704-8_25.

PMID:
22821538
15.

Characterizing rapid, activity-linked conformational transitions in proteins via sub-second hydrogen deuterium exchange mass spectrometry.

Resetca D, Wilson DJ.

FEBS J. 2013 Nov;280(22):5616-25. doi: 10.1111/febs.12332. Epub 2013 Jun 11. Review.

16.

Measuring the hydrogen/deuterium exchange of proteins at high spatial resolution by mass spectrometry: overcoming gas-phase hydrogen/deuterium scrambling.

Rand KD, Zehl M, Jørgensen TJ.

Acc Chem Res. 2014 Oct 21;47(10):3018-27. doi: 10.1021/ar500194w. Epub 2014 Aug 29. Review.

PMID:
25171396
17.

Resolving isotopic fine structure to detect and quantify natural abundance- and hydrogen/deuterium exchange-derived isotopomers.

Liu Q, Easterling ML, Agar JN.

Anal Chem. 2014 Jan 7;86(1):820-5. doi: 10.1021/ac403365g. Epub 2013 Dec 20.

18.

A comparison of mass spectrometry based hydrogen deuterium exchange methods for probing the cyclophilin A cyclosporin complex.

Esswein ST, Florance HV, Baillie L, Lippens J, Barran PE.

J Chromatogr A. 2010 Oct 22;1217(43):6709-17. doi: 10.1016/j.chroma.2010.05.028. Epub 2010 May 25.

PMID:
20557890
19.

Changes in protein structure monitored by use of gas-phase hydrogen/deuterium exchange.

Beeston HS, Ault JR, Pringle SD, Brown JM, Ashcroft AE.

Proteomics. 2015 Aug;15(16):2842-50. doi: 10.1002/pmic.201400440. Epub 2015 Mar 18.

20.

Peptide-column interactions and their influence on back exchange rates in hydrogen/deuterium exchange-MS.

Sheff JG, Rey M, Schriemer DC.

J Am Soc Mass Spectrom. 2013 Jul;24(7):1006-15. doi: 10.1007/s13361-013-0639-4. Epub 2013 May 7.

PMID:
23649779

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