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Items: 1 to 20 of 104

1.

Principal curves as skeletons of tubular objects: locally characterizing the structures of axons.

Bas E, Erdogmus D.

Neuroinformatics. 2011 Sep;9(2-3):181-91. doi: 10.1007/s12021-011-9105-2.

PMID:
21336847
2.

Automated tracing of neurites from light microscopy stacks of images.

Chothani P, Mehta V, Stepanyants A.

Neuroinformatics. 2011 Sep;9(2-3):263-78. doi: 10.1007/s12021-011-9121-2.

3.

Diadem X: automated 4 dimensional analysis of morphological data.

He HY, Cline HT.

Neuroinformatics. 2011 Sep;9(2-3):107-12. doi: 10.1007/s12021-011-9098-x. No abstract available.

4.

Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors.

Türetken E, González G, Blum C, Fua P.

Neuroinformatics. 2011 Sep;9(2-3):279-302. doi: 10.1007/s12021-011-9122-1.

PMID:
21573886
5.

Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions.

Peng H, Long F, Zhao T, Myers E.

Neuroinformatics. 2011 Sep;9(2-3):103-5. doi: 10.1007/s12021-010-9090-x. No abstract available.

PMID:
21170608
6.

A broadly applicable 3-D neuron tracing method based on open-curve snake.

Wang Y, Narayanaswamy A, Tsai CL, Roysam B.

Neuroinformatics. 2011 Sep;9(2-3):193-217. doi: 10.1007/s12021-011-9110-5.

PMID:
21399937
7.

An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images.

Haass-Koffler CL, Naeemuddin M, Bartlett SE.

J Vis Exp. 2012 Aug 31;(66):e4233. doi: 10.3791/4233.

8.

3-D image pre-processing algorithms for improved automated tracing of neuronal arbors.

Narayanaswamy A, Wang Y, Roysam B.

Neuroinformatics. 2011 Sep;9(2-3):219-31. doi: 10.1007/s12021-011-9116-z.

PMID:
21537877
9.

3D Axon structure extraction and analysis in confocal fluorescence microscopy images.

Zhang Y, Zhou X, Lu J, Lichtman J, Adjeroh D, Wong ST.

Neural Comput. 2008 Aug;20(8):1899-927. doi: 10.1162/neco.2008.05-07-519.

10.

Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking.

Liu S, Zhang D, Liu S, Feng D, Peng H, Cai W.

Neuroinformatics. 2016 Oct;14(4):387-401. doi: 10.1007/s12021-016-9302-0.

PMID:
27184384
11.

Curve-skeleton extraction using iterative least squares optimization.

Wang YS, Lee TY.

IEEE Trans Vis Comput Graph. 2008 Jul-Aug;14(4):926-36. doi: 10.1109/TVCG.2008.38.

PMID:
18467765
12.

3D shape-dependent thinning method for trabecular bone characterization.

Jennane R, Almhdie A, Aufort G, Lespessailles E.

Med Phys. 2012 Jan;39(1):168-78. doi: 10.1118/1.3664005.

PMID:
22225286
13.

Automated reconstruction of neuronal morphology based on local geometrical and global structural models.

Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E.

Neuroinformatics. 2011 Sep;9(2-3):247-61. doi: 10.1007/s12021-011-9120-3.

14.

Three-dimensional neuron tracing by voxel scooping.

Rodriguez A, Ehlenberger DB, Hof PR, Wearne SL.

J Neurosci Methods. 2009 Oct 30;184(1):169-75. doi: 10.1016/j.jneumeth.2009.07.021. Epub 2009 Jul 24.

15.

TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.

Zhou Z, Liu X, Long B, Peng H.

Neuroinformatics. 2016 Jan;14(1):41-50. doi: 10.1007/s12021-015-9278-1.

PMID:
26306866
16.

Multi-scale segmentation of neurons based on one-class classification.

Hernandez-Herrera P, Papadakis M, Kakadiaris IA.

J Neurosci Methods. 2016 Jun 15;266:94-106. doi: 10.1016/j.jneumeth.2016.03.019. Epub 2016 Mar 30.

PMID:
27038663
17.

Automated Neuron Tracing Methods: An Updated Account.

Acciai L, Soda P, Iannello G.

Neuroinformatics. 2016 Oct;14(4):353-67. doi: 10.1007/s12021-016-9310-0. Review.

PMID:
27447185
18.

A Quantitative Three-Dimensional Image Analysis Tool for Maximal Acquisition of Spatial Heterogeneity Data.

Allenby MC, Misener R, Panoskaltsis N, Mantalaris A.

Tissue Eng Part C Methods. 2017 Feb;23(2):108-117. doi: 10.1089/ten.TEC.2016.0413.

19.

A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems.

Qu L, Peng H.

Bioinformatics. 2010 Apr 15;26(8):1091-7. doi: 10.1093/bioinformatics/btq072. Epub 2010 Feb 19.

20.

Detection of the optimal neuron traces in confocal microscopy images.

Vasilkoski Z, Stepanyants A.

J Neurosci Methods. 2009 Mar 30;178(1):197-204. doi: 10.1016/j.jneumeth.2008.11.008. Epub 2008 Nov 19.

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