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Items: 1 to 20 of 352

1.

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.

Lenzi L, Facchin F, Piva F, Giulietti M, Pelleri MC, Frabetti F, Vitale L, Casadei R, Canaider S, Bortoluzzi S, Coppe A, Danieli GA, Principato G, Ferrari S, Strippoli P.

BMC Genomics. 2011 Feb 18;12:121. doi: 10.1186/1471-2164-12-121.

2.

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.

Baron D, Dubois E, Bihouée A, Teusan R, Steenman M, Jourdon P, Magot A, Péréon Y, Veitia R, Savagner F, Ramstein G, Houlgatte R.

BMC Genomics. 2011 Feb 16;12:113. doi: 10.1186/1471-2164-12-113.

3.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

4.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

5.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

6.

QPCR: Application for real-time PCR data management and analysis.

Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z.

BMC Bioinformatics. 2009 Aug 27;10:268. doi: 10.1186/1471-2105-10-268.

7.

UniGene Tabulator: a full parser for the UniGene format.

Lenzi L, Frabetti F, Facchin F, Casadei R, Vitale L, Canaider S, Carinci P, Zannotti M, Strippoli P.

Bioinformatics. 2006 Oct 15;22(20):2570-1. Epub 2006 Aug 7.

PMID:
16895929
8.

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

BMC Genomics. 2009 Mar 5;10:98. doi: 10.1186/1471-2164-10-98.

9.

Integrated differential transcriptome maps of Acute Megakaryoblastic Leukemia (AMKL) in children with or without Down Syndrome (DS).

Pelleri MC, Piovesan A, Caracausi M, Berardi AC, Vitale L, Strippoli P.

BMC Med Genomics. 2014 Dec 5;7:63. doi: 10.1186/s12920-014-0063-z.

10.

Novel software package for cross-platform transcriptome analysis (CPTRA).

Zhou X, Su Z, Sammons RD, Peng Y, Tranel PJ, Stewart CN Jr, Yuan JS.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S16. doi: 10.1186/1471-2105-10-S11-S16.

11.

DEEP--a tool for differential expression effector prediction.

Degenhardt J, Haubrock M, Dönitz J, Wingender E, Crass T.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W619-24. Epub 2007 Jun 21.

12.

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

BMC Bioinformatics. 2006 Dec 18;7:535.

13.
14.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

15.

MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.

Lelandais G, Marc P, Vincens P, Jacq C, Vialette S.

BMC Bioinformatics. 2004 Mar 3;5:20.

16.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

17.

GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers.

D'Addabbo P, Lenzi L, Facchin F, Casadei R, Canaider S, Vitale L, Frabetti F, Carinci P, Zannotti M, Strippoli P.

Bioinformatics. 2004 Nov 1;20(16):2883-5. Epub 2004 May 14.

PMID:
15145799
18.

SoyXpress: a database for exploring the soybean transcriptome.

Cheng KC, Strömvik MV.

BMC Genomics. 2008 Aug 1;9:368. doi: 10.1186/1471-2164-9-368.

19.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

20.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072

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