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Items: 1 to 20 of 109

1.

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes.

Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, Ussery DW.

Stand Genomic Sci. 2009 Sep 25;1(2):204-15. doi: 10.4056/sigs.28177.

2.

The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology.

Hallin PF, Binnewies TT, Ussery DW.

Mol Biosyst. 2008 May;4(5):363-71. doi: 10.1039/b717118h. Epub 2008 Mar 17.

PMID:
18414733
3.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

4.

SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.

Lechat P, Souche E, Moszer I.

BMC Bioinformatics. 2013 Sep 22;14:277. doi: 10.1186/1471-2105-14-277.

5.

RNASeqBrowser: a genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks.

An J, Lai J, Wood DL, Sajjanhar A, Wang C, Tevz G, Lehman ML, Nelson CC.

BMC Genomics. 2015 Mar 1;16:145. doi: 10.1186/s12864-015-1346-2.

6.

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data.

Hallin PF, Ussery DW.

Bioinformatics. 2004 Dec 12;20(18):3682-6. Epub 2004 Jul 15.

PMID:
15256401
7.

MatrixPlot: visualizing sequence constraints.

Gorodkin J, Staerfeldt HH, Lund O, Brunak S.

Bioinformatics. 1999 Sep;15(9):769-70.

PMID:
10498780
9.

Combo: a whole genome comparative browser.

Engels R, Yu T, Burge C, Mesirov JP, DeCaprio D, Galagan JE.

Bioinformatics. 2006 Jul 15;22(14):1782-3. Epub 2006 May 18.

PMID:
16709588
10.

Genome Annotation Resource Fields--GARFIELD: a genome browser for Felis catus.

Pontius JU, O'Brien SJ.

J Hered. 2007;98(5):386-9. Epub 2007 Jul 23.

PMID:
17646276
11.

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.

Ovcharenko I, Nobrega MA, Loots GG, Stubbs L.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W280-6.

12.

J-Circos: an interactive Circos plotter.

An J, Lai J, Sajjanhar A, Batra J, Wang C, Nelson CC.

Bioinformatics. 2015 May 1;31(9):1463-5. doi: 10.1093/bioinformatics/btu842. Epub 2014 Dec 24.

PMID:
25540184
13.

The Bluejay genome browser.

Soh J, Gordon PM, Sensen CW.

Curr Protoc Bioinformatics. 2012 Mar;Chapter 10:Unit10.9. doi: 10.1002/0471250953.bi1009s37.

PMID:
22389011
14.

WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.

Liang C, Liu L, Ji G.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W77-83. doi: 10.1093/nar/gkp389. Epub 2009 May 22.

15.

Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.

Gautier L, Lund O.

PLoS One. 2013 Dec 31;8(12):e83784. doi: 10.1371/journal.pone.0083784. eCollection 2013.

16.

SynBrowse: a synteny browser for comparative sequence analysis.

Pan X, Stein L, Brendel V.

Bioinformatics. 2005 Sep 1;21(17):3461-8. Epub 2005 Jun 30.

PMID:
15994196
17.
18.

BugView: a browser for comparing genomes.

Leader DP.

Bioinformatics. 2004 Jan 1;20(1):129-30.

PMID:
14693822
19.

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.

Zhu Z, Niu B, Chen J, Wu S, Sun S, Li W.

Bioinformatics. 2013 Jan 1;29(1):122-3. doi: 10.1093/bioinformatics/bts567. Epub 2012 Oct 8.

20.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668

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