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Items: 1 to 20 of 87

1.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
2.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

3.

Phylogenomic analyses data of the avian phylogenomics project.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium.

Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015.

4.

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

Chojnowski JL, Kimball RT, Braun EL.

Gene. 2008 Feb 29;410(1):89-96. doi: 10.1016/j.gene.2007.11.016. Epub 2007 Dec 7.

PMID:
18191344
5.

Evolution. Building the tree of life, genome by genome.

Pennisi E.

Science. 2008 Jun 27;320(5884):1716-7. doi: 10.1126/science.320.5884.1716. No abstract available.

PMID:
18583591
6.

A molecular phylogenetic survey of caprimulgiform nightbirds illustrates the utility of non-coding sequences.

Braun MJ, Huddleston CJ.

Mol Phylogenet Evol. 2009 Dec;53(3):948-60. doi: 10.1016/j.ympev.2009.08.025. Epub 2009 Aug 29.

PMID:
19720151
7.

Tracing the most parsimonious indel history.

Snir S, Pachter L.

J Comput Biol. 2011 Aug;18(8):967-86. doi: 10.1089/cmb.2010.0325. Epub 2011 Jul 5.

PMID:
21728862
8.

The prion protein gene: identifying regulatory signals using marsupial sequence.

Premzl M, Delbridge M, Gready JE, Wilson P, Johnson M, Davis J, Kuczek E, Marshall Graves JA.

Gene. 2005 Apr 11;349:121-34.

PMID:
15777726
9.
10.

Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes.

Bonilla AJ, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2010 Aug;56(2):536-42. doi: 10.1016/j.ympev.2010.04.006. Epub 2010 Apr 14.

PMID:
20398778
11.

The evolution of birds: an overview of the avian tree of life.

Bennu DA.

Lab Anim (NY). 2004 May;33(5):42-8. Review.

PMID:
15141246
12.
13.

A multilocus phylogeny of the Sulidae (Aves: Pelecaniformes).

Patterson SA, Morris-Pocock JA, Friesen VL.

Mol Phylogenet Evol. 2011 Feb;58(2):181-91. doi: 10.1016/j.ympev.2010.11.021. Epub 2010 Dec 7.

PMID:
21144905
14.

The contribution of transposable elements to Bos taurus gene structure.

Almeida LM, Silva IT, Silva WA Jr, Castro JP, Riggs PK, Carareto CM, Amaral ME.

Gene. 2007 Apr 1;390(1-2):180-9. Epub 2006 Oct 28.

PMID:
17157447
15.
17.

Towards an assessment of character interdependence in avian RNA phylogenetics: a general secondary structure model for the avian mitochondrial 16S rRNA.

do Amaral FR, Sheldon FH, Wajntal A.

Mol Phylogenet Evol. 2010 Jul;56(1):498-506. doi: 10.1016/j.ympev.2010.03.016. Epub 2010 Mar 17. No abstract available.

PMID:
20302954
18.
19.

Parallel radiations in the primary clades of birds.

Fain MG, Houde P.

Evolution. 2004 Nov;58(11):2558-73.

PMID:
15612298
20.

Remarkable abundance and evolution of mobile group II introns in Wolbachia bacterial endosymbionts.

Leclercq S, Giraud I, Cordaux R.

Mol Biol Evol. 2011 Jan;28(1):685-97. doi: 10.1093/molbev/msq238. Epub 2010 Sep 6.

PMID:
20819906

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