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Items: 1 to 20 of 169

1.

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu TQ, Mac V, Masters IR, McCloud JJ, McDonough MJ, Medenbach AJ, Menon A, Miller R, Morgan BK, Ng PC, Nguyen E, Nguyen KT, Nguyen ET, Nicholson KM, Parnell LA, Peirce CE, Perz AM, Peterson LJ, Pferdehirt RE, Philip SV, Pogliano K, Pogliano J, Polley T, Puopolo EJ, Rabinowitz HS, Resiss MJ, Rhyan CN, Robinson YM, Rodriguez LL, Rose AC, Rubin JD, Ruby JA, Saha MS, Sandoz JW, Savitskaya J, Schipper DJ, Schnitzler CE, Schott AR, Segal JB, Shaffer CD, Sheldon KE, Shepard EM, Shepardson JW, Shroff MK, Simmons JM, Simms EF, Simpson BM, Sinclair KM, Sjoholm RL, Slette IJ, Spaulding BC, Straub CL, Stukey J, Sughrue T, Tang TY, Tatyana LM, Taylor SB, Taylor BJ, Temple LM, Thompson JV, Tokarz MP, Trapani SE, Troum AP, Tsay J, Tubbs AT, Walton JM, Wang DH, Wang H, Warner JR, Weisser EG, Wendler SC, Weston-Hafer KA, Whelan HM, Williamson KE, Willis AN, Wirtshafter HS, Wong TW, Wu P, Yang Yj, Yee BC, Zaidins DA, Zhang B, Zúniga MY, Hendrix RW, Hatfull GF.

PLoS One. 2011 Jan 27;6(1):e16329. doi: 10.1371/journal.pone.0016329.

2.

Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U.

Lima-Junior JD, Viana-Niero C, Conde Oliveira DV, Machado GE, Rabello MC, Martins-Junior J, Martins LF, Digiampietri LA, da Silva AM, Setubal JC, Russell DA, Jacobs-Sera D, Pope WH, Hatfull GF, Leão SC.

BMC Microbiol. 2016 Jun 17;16(1):111. doi: 10.1186/s12866-016-0734-3.

3.

Complete genome sequences of 138 mycobacteriophages.

Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science Program; KwaZulu-Natal Research Institute for Tuberculosis and HIV Mycobacterial Genetics Course Students; Phage Hunters Integrating Research and Education Program.

J Virol. 2012 Feb;86(4):2382-4. doi: 10.1128/JVI.06870-11.

4.

Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Pope WH, Mavrich TN, Garlena RA, Guerrero-Bustamante CA, Jacobs-Sera D, Montgomery MT, Russell DA, Warner MH; Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES), Hatfull GF.

MBio. 2017 Aug 15;8(4). pii: e01069-17. doi: 10.1128/mBio.01069-17.

5.

Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.

Pope WH, Anders KR, Baird M, Bowman CA, Boyle MM, Broussard GW, Chow T, Clase KL, Cooper S, Cornely KA, DeJong RJ, Delesalle VA, Deng L, Dunbar D, Edgington NP, Ferreira CM, Weston Hafer K, Hartzog GA, Hatherill JR, Hughes LE, Ipapo K, Krukonis GP, Meier CG, Monti DL, Olm MR, Page ST, Peebles CL, Rinehart CA, Rubin MR, Russell DA, Sanders ER, Schoer M, Shaffer CD, Wherley J, Vazquez E, Yuan H, Zhang D, Cresawn SG, Jacobs-Sera D, Hendrix RW, Hatfull GF.

J Virol. 2014 Mar;88(5):2461-80. doi: 10.1128/JVI.03363-13. Epub 2013 Dec 11.

6.

Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4.

Pope WH, Ferreira CM, Jacobs-Sera D, Benjamin RC, Davis AJ, DeJong RJ, Elgin SC, Guilfoile FR, Forsyth MH, Harris AD, Harvey SE, Hughes LE, Hynes PM, Jackson AS, Jalal MD, MacMurray EA, Manley CM, McDonough MJ, Mosier JL, Osterbann LJ, Rabinowitz HS, Rhyan CN, Russell DA, Saha MS, Shaffer CD, Simon SE, Sims EF, Tovar IG, Weisser EG, Wertz JT, Weston-Hafer KA, Williamson KE, Zhang B, Cresawn SG, Jain P, Piuri M, Jacobs WR Jr, Hendrix RW, Hatfull GF.

PLoS One. 2011;6(10):e26750. doi: 10.1371/journal.pone.0026750. Epub 2011 Oct 28.

7.

Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.

Mageeney C, Pope WH, Harrison M, Moran D, Cross T, Jacobs-Sera D, Hendrix RW, Dunbar D, Hatfull GF.

J Virol. 2012 May;86(9):4762-75. doi: 10.1128/JVI.00075-12. Epub 2012 Feb 22.

8.

Mycobacteriophages: genes and genomes.

Hatfull GF.

Annu Rev Microbiol. 2010;64:331-56. doi: 10.1146/annurev.micro.112408.134233. Review.

PMID:
20528690
9.

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.

Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course.

Elife. 2015 Apr 28;4:e06416. doi: 10.7554/eLife.06416.

10.

Evolutionary interpretations of mycobacteriophage biodiversity and host-range through the analysis of codon usage bias.

Esposito LA, Gupta S, Streiter F, Prasad A, Dennehy JJ.

Microb Genom. 2016 Oct 21;2(10):e000079. doi: 10.1099/mgen.0.000079. eCollection 2016 Oct.

11.

Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.

Hatfull GF, Jacobs-Sera D, Lawrence JG, Pope WH, Russell DA, Ko CC, Weber RJ, Patel MC, Germane KL, Edgar RH, Hoyte NN, Bowman CA, Tantoco AT, Paladin EC, Myers MS, Smith AL, Grace MS, Pham TT, O'Brien MB, Vogelsberger AM, Hryckowian AJ, Wynalek JL, Donis-Keller H, Bogel MW, Peebles CL, Cresawn SG, Hendrix RW.

J Mol Biol. 2010 Mar 19;397(1):119-43. doi: 10.1016/j.jmb.2010.01.011. Epub 2010 Jan 11.

12.

On the nature of mycobacteriophage diversity and host preference.

Jacobs-Sera D, Marinelli LJ, Bowman C, Broussard GW, Guerrero Bustamante C, Boyle MM, Petrova ZO, Dedrick RM, Pope WH; Science Education Alliance Phage Hunters Advancing Genomics And Evolutionary Science Sea-Phages Program, Modlin RL, Hendrix RW, Hatfull GF.

Virology. 2012 Dec 20;434(2):187-201. doi: 10.1016/j.virol.2012.09.026. Epub 2012 Oct 22. Review.

13.

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements.

Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF.

Microbiology. 2009 Sep;155(Pt 9):2962-77. doi: 10.1099/mic.0.030486-0. Epub 2009 Jun 25.

14.

The secret lives of mycobacteriophages.

Hatfull GF.

Adv Virus Res. 2012;82:179-288. doi: 10.1016/B978-0-12-394621-8.00015-7. Review.

PMID:
22420855
15.

Isolation and characterization of bacteriophages from India, with lytic activity against Mycobacterium tuberculosis.

Bajpai U, Mehta AK, Eniyan K, Sinha A, Ray A, Virdi S, Ahmad S, Shah A, Arora D, Marwaha D, Chauhan G, Saraswat P, Bathla P, Singh R.

Can J Microbiol. 2018 Jul;64(7):483-491. doi: 10.1139/cjm-2017-0387. Epub 2018 Mar 15.

PMID:
29544082
16.

Cluster J mycobacteriophages: intron splicing in capsid and tail genes.

Pope WH, Jacobs-Sera D, Best AA, Broussard GW, Connerly PL, Dedrick RM, Kremer TA, Offner S, Ogiefo AH, Pizzorno MC, Rockenbach K, Russell DA, Stowe EL, Stukey J, Thibault SA, Conway JF, Hendrix RW, Hatfull GF.

PLoS One. 2013 Jul 9;8(7):e69273. doi: 10.1371/journal.pone.0069273. Print 2013.

17.

Genomic and proteomic features of mycobacteriophage SWU1 isolated from China soil.

Fan X, Yan J, Xie L, Zeng L, Young RF 3rd, Xie J.

Gene. 2015 Apr 25;561(1):45-53. doi: 10.1016/j.gene.2015.02.053. Epub 2015 Feb 19.

18.

Analysis of novel mycobacteriophages indicates the existence of different strategies for phage inheritance in mycobacteria.

Stella EJ, Franceschelli JJ, Tasselli SE, Morbidoni HR.

PLoS One. 2013;8(2):e56384. doi: 10.1371/journal.pone.0056384. Epub 2013 Feb 28.

19.

Expression and evolutionary patterns of mycobacteriophage D29 and its temperate close relatives.

Dedrick RM, Mavrich TN, Ng WL, Hatfull GF.

BMC Microbiol. 2017 Dec 2;17(1):225. doi: 10.1186/s12866-017-1131-2.

20.

Comparative analysis of the base composition and codon usages in fourteen mycobacteriophage genomes.

Sahu K, Gupta SK, Sau S, Ghosh TC.

J Biomol Struct Dyn. 2005 Aug;23(1):63-71.

PMID:
15918677

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