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Items: 1 to 20 of 111

1.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

2.

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex.

Rappoport N, Linial M.

BMC Bioinformatics. 2013;14 Suppl 3:S11. doi: 10.1186/1471-2105-14-S3-S11. Epub 2013 Feb 28.

3.

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.

4.

Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation.

Rund SS, Yoo B, Alam C, Green T, Stephens MT, Zeng E, George GF, Sheppard AD, Duffield GE, Milenković T, Pfrender ME.

BMC Genomics. 2016 Aug 18;17:653. doi: 10.1186/s12864-016-2998-2.

5.

wFleaBase: the Daphnia genome database.

Colbourne JK, Singan VR, Gilbert DG.

BMC Bioinformatics. 2005 Mar 7;6:45.

6.

Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution.

Schurko AM, Logsdon JM Jr, Eads BD.

BMC Evol Biol. 2009 Apr 21;9:78. doi: 10.1186/1471-2148-9-78.

7.

Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex.

Thomson SA, Baldwin WS, Wang YH, Kwon G, Leblanc GA.

BMC Genomics. 2009 Oct 28;10:500. doi: 10.1186/1471-2164-10-500.

8.

Unusual duplication of the insulin-like receptor in the crustacean Daphnia pulex.

Boucher P, Ditlecadet D, Dubé C, Dufresne F.

BMC Evol Biol. 2010 Oct 12;10:305. doi: 10.1186/1471-2148-10-305.

9.

Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins.

Shaw JR, Colbourne JK, Davey JC, Glaholt SP, Hampton TH, Chen CY, Folt CL, Hamilton JW.

BMC Genomics. 2007 Dec 21;8:477.

10.

Predator-induced defences in Daphnia pulex: selection and evaluation of internal reference genes for gene expression studies with real-time PCR.

Spanier KI, Leese F, Mayer C, Colbourne JK, Gilbert D, Pfrender ME, Tollrian R.

BMC Mol Biol. 2010 Jun 29;11:50. doi: 10.1186/1471-2199-11-50.

11.

The components of the Daphnia pulex immune system as revealed by complete genome sequencing.

McTaggart SJ, Conlon C, Colbourne JK, Blaxter ML, Little TJ.

BMC Genomics. 2009 Apr 22;10:175. doi: 10.1186/1471-2164-10-175.

12.

Ancient and Recent Duplications Support Functional Diversity of Daphnia Opsins.

Brandon CS, Greenwold MJ, Dudycha JL.

J Mol Evol. 2017 Jan;84(1):12-28. doi: 10.1007/s00239-016-9777-1. Epub 2016 Dec 21.

PMID:
28004131
13.

Genomics. A genome for the environment.

Ebert D.

Science. 2011 Feb 4;331(6017):539-40. doi: 10.1126/science.1202092. No abstract available.

PMID:
21292957
14.

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L.

Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19.

15.

The cytochrome P450 (CYP) gene superfamily in Daphnia pulex.

Baldwin WS, Marko PB, Nelson DR.

BMC Genomics. 2009 Apr 21;10:169. doi: 10.1186/1471-2164-10-169.

16.

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex.

Ye Z, Xu S, Spitze K, Asselman J, Jiang X, Ackerman MS, Lopez J, Harker B, Raborn RT, Thomas WK, Ramsdell J, Pfrender ME, Lynch M.

G3 (Bethesda). 2017 May 5;7(5):1405-1416. doi: 10.1534/g3.116.038638.

17.

Partial sequence of the mitochondrial genome of the crustacean Daphnia pulex.

Crease TJ, Little TJ.

Curr Genet. 1997 Jan;31(1):48-54.

PMID:
9000380
18.

Localization of the genetic determinants of meiosis suppression in Daphnia pulex.

Lynch M, Seyfert A, Eads B, Williams E.

Genetics. 2008 Sep;180(1):317-27. doi: 10.1534/genetics.107.084657. Epub 2008 Aug 9.

19.

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.

Rago A, Gilbert DG, Choi JH, Sackton TB, Wang X, Kelkar YD, Werren JH, Colbourne JK.

BMC Genomics. 2016 Aug 25;17:678. doi: 10.1186/s12864-016-2886-9.

20.

ZINC-INDUCED FACILITATOR-LIKE family in plants: lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs.

Ricachenevsky FK, Sperotto RA, Menguer PK, Sperb ER, Lopes KL, Fett JP.

BMC Plant Biol. 2011 Jan 25;11:20. doi: 10.1186/1471-2229-11-20.

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