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Items: 1 to 20 of 123

1.

The development of metabolomic sampling procedures for Pichia pastoris, and baseline metabolome data.

Tredwell GD, Edwards-Jones B, Leak DJ, Bundy JG.

PLoS One. 2011 Jan 21;6(1):e16286. doi: 10.1371/journal.pone.0016286.

2.

Metabolomics sampling of Pichia pastoris revisited: rapid filtration prevents metabolite loss during quenching.

Russmayer H, Troyer C, Neubauer S, Steiger MG, Gasser B, Hann S, Koellensperger G, Sauer M, Mattanovich D.

FEMS Yeast Res. 2015 Sep;15(6). pii: fov049. doi: 10.1093/femsyr/fov049. Epub 2015 Jun 19.

PMID:
26091839
3.

Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics and instationary ¹³C flux analysis.

Jordà J, Suarez C, Carnicer M, ten Pierick A, Heijnen JJ, van Gulik W, Ferrer P, Albiol J, Wahl A.

BMC Syst Biol. 2013 Feb 28;7:17. doi: 10.1186/1752-0509-7-17.

4.

Development of quantitative metabolomics for Pichia pastoris.

Carnicer M, Canelas AB, Ten Pierick A, Zeng Z, van Dam J, Albiol J, Ferrer P, Heijnen JJ, van Gulik W.

Metabolomics. 2012 Apr;8(2):284-298. Epub 2011 Apr 21.

5.

Evaluation of sampling and extraction methodologies for the global metabolic profiling of Saccharophagus degradans.

Shin MH, Lee DY, Liu KH, Fiehn O, Kim KH.

Anal Chem. 2010 Aug 1;82(15):6660-6. doi: 10.1021/ac1012656.

PMID:
20669998
6.

Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria.

Krall L, Huege J, Catchpole G, Steinhauser D, Willmitzer L.

J Chromatogr B Analyt Technol Biomed Life Sci. 2009 Oct 1;877(27):2952-60. doi: 10.1016/j.jchromb.2009.07.006. Epub 2009 Jul 10.

PMID:
19631594
7.

13 C metabolic flux profiling of Pichia pastoris grown in aerobic batch cultures on glucose revealed high relative anabolic use of TCA cycle and limited incorporation of provided precursors of branched-chain amino acids.

Zhang M, Yu XW, Xu Y, Jouhten P, Swapna GVT, Glaser RW, Hunt JF, Montelione GT, Maaheimo H, Szyperski T.

FEBS J. 2017 Sep;284(18):3100-3113. doi: 10.1111/febs.14180. Epub 2017 Aug 7.

PMID:
28731268
8.

Interlaboratory comparison for quantitative primary metabolite profiling in Pichia pastoris.

Klavins K, Neubauer S, Al Chalabi A, Sonntag D, Haberhauer-Troyer C, Russmayer H, Sauer M, Mattanovich D, Hann S, Koellensperger G.

Anal Bioanal Chem. 2013 Jun;405(15):5159-69. doi: 10.1007/s00216-013-6964-4. Epub 2013 Apr 19.

PMID:
23604417
9.

Identification of endogenous metabolites in human sperm cells using proton nuclear magnetic resonance ((1) H-NMR) spectroscopy and gas chromatography-mass spectrometry (GC-MS).

Paiva C, Amaral A, Rodriguez M, Canyellas N, Correig X, Ballescà JL, Ramalho-Santos J, Oliva R.

Andrology. 2015 May;3(3):496-505. doi: 10.1111/andr.12027. Epub 2015 Apr 8.

10.

Evaluation and optimization of metabolome sample preparation methods for Saccharomyces cerevisiae.

Kim S, Lee DY, Wohlgemuth G, Park HS, Fiehn O, Kim KH.

Anal Chem. 2013 Feb 19;85(4):2169-76. doi: 10.1021/ac302881e. Epub 2013 Jan 25.

PMID:
23289506
11.

Metabolite extraction from suspension-cultured mammalian cells for global metabolite profiling.

Sellick CA, Hansen R, Stephens GM, Goodacre R, Dickson AJ.

Nat Protoc. 2011 Jul 28;6(8):1241-9. doi: 10.1038/nprot.2011.366.

PMID:
21799492
12.

Analytical methodology for metabolomics study of adherent mammalian cells using NMR, GC-MS and LC-HRMS.

Madji Hounoum B, Blasco H, Nadal-Desbarats L, Diémé B, Montigny F, Andres CR, Emond P, Mavel S.

Anal Bioanal Chem. 2015 Nov;407(29):8861-72. doi: 10.1007/s00216-015-9047-x. Epub 2015 Oct 7.

PMID:
26446897
13.

Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures.

Jordà J, Jouhten P, Cámara E, Maaheimo H, Albiol J, Ferrer P.

Microb Cell Fact. 2012 May 8;11:57. doi: 10.1186/1475-2859-11-57.

14.

A protocol for the investigation of the intracellular Staphylococcus aureus metabolome.

Meyer H, Liebeke M, Lalk M.

Anal Biochem. 2010 Jun 15;401(2):250-9. doi: 10.1016/j.ab.2010.03.003. Epub 2010 Mar 6.

PMID:
20211591
15.

Atmospheric vs. anaerobic processing of metabolome samples for the metabolite profiling of a strict anaerobic bacterium, Clostridium acetobutylicum.

Lee SH, Kim S, Kwon MA, Jung YH, Shin YA, Kim KH.

Biotechnol Bioeng. 2014 Dec;111(12):2528-36. doi: 10.1002/bit.25314. Epub 2014 Sep 10.

PMID:
24942337
16.

Yeast metabolomics: sample preparation for a GC/MS-based analysis.

Carneiro S, Pereira R, Rocha I.

Methods Mol Biol. 2014;1152:197-207. doi: 10.1007/978-1-4939-0563-8_12.

PMID:
24744035
17.

Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics.

Canelas AB, ten Pierick A, Ras C, Seifar RM, van Dam JC, van Gulik WM, Heijnen JJ.

Anal Chem. 2009 Sep 1;81(17):7379-89. doi: 10.1021/ac900999t.

PMID:
19653633
18.

The combination of four analytical methods to explore skeletal muscle metabolomics: Better coverage of metabolic pathways or a marketing argument?

Bruno C, Patin F, Bocca C, Nadal-Desbarats L, Bonnier F, Reynier P, Emond P, Vourc'h P, Joseph-Delafont K, Corcia P, Andres CR, Blasco H.

J Pharm Biomed Anal. 2018 Jan 30;148:273-279. doi: 10.1016/j.jpba.2017.10.013. Epub 2017 Oct 18.

PMID:
29059617
19.

1H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon.

Biais B, Allwood JW, Deborde C, Xu Y, Maucourt M, Beauvoit B, Dunn WB, Jacob D, Goodacre R, Rolin D, Moing A.

Anal Chem. 2009 Apr 15;81(8):2884-94. doi: 10.1021/ac9001996.

PMID:
19298059
20.

Different-batch metabolome analysis of Saccharomyces cerevisiae based on gas chromatography/mass spectrometry.

Kawase N, Tsugawa H, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Feb;117(2):248-55. doi: 10.1016/j.jbiosc.2013.07.008. Epub 2013 Aug 19.

PMID:
23968869

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