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Items: 1 to 20 of 146

1.

Benchmarking ontologies: bigger or better?

Yao L, Divoli A, Mayzus I, Evans JA, Rzhetsky A.

PLoS Comput Biol. 2011 Jan 13;7(1):e1001055. doi: 10.1371/journal.pcbi.1001055.

2.

Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: an application to Alzheimer's disease.

Dramé K, Diallo G, Delva F, Dartigues JF, Mouillet E, Salamon R, Mougin F.

J Biomed Inform. 2014 Apr;48:171-82. doi: 10.1016/j.jbi.2013.12.013. Epub 2013 Dec 29.

3.

An Approach for Learning Expressive Ontologies in Medical Domain.

Rios-Alvarado AB, Lopez-Arevalo I, Tello-Leal E, Sosa-Sosa VJ.

J Med Syst. 2015 Aug;39(8):75. doi: 10.1007/s10916-015-0261-z. Epub 2015 Jun 16.

PMID:
26077127
4.

MiDas: automatic extraction of a common domain of discourse in sleep medicine for multi-center data integration.

Sahoo SS, Ogbuji C, Luo L, Dong X, Cui L, Redline SS, Zhang GQ.

AMIA Annu Symp Proc. 2011;2011:1196-205. Epub 2011 Oct 22.

5.

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

Burek P, Hoehndorf R, Loebe F, Visagie J, Herre H, Kelso J.

Bioinformatics. 2006 Jul 15;22(14):e66-73.

PMID:
16873523
6.

Relations as patterns: bridging the gap between OBO and OWL.

Hoehndorf R, Oellrich A, Dumontier M, Kelso J, Rebholz-Schuhmann D, Herre H.

BMC Bioinformatics. 2010 Aug 31;11:441. doi: 10.1186/1471-2105-11-441.

7.

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning.

Hoehndorf R, Dumontier M, Oellrich A, Rebholz-Schuhmann D, Schofield PN, Gkoutos GV.

PLoS One. 2011;6(7):e22006. doi: 10.1371/journal.pone.0022006. Epub 2011 Jul 18.

8.

Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity.

Quesada-Martínez M, Fernández-Breis JT, Stevens R, Mikroyannidi E.

Methods Inf Med. 2015;54(1):56-64. doi: 10.3414/ME13-02-0026. Epub 2014 Jul 4.

PMID:
24993110
9.

BOAT: automatic alignment of biomedical ontologies using term informativeness and candidate selection.

Chua WW, Kim JJ.

J Biomed Inform. 2012 Apr;45(2):337-49. doi: 10.1016/j.jbi.2011.11.010. Epub 2011 Dec 2.

10.

A knowledge-driven approach to biomedical document conceptualization.

Zheng HT, Borchert C, Jiang Y.

Artif Intell Med. 2010 Jun;49(2):67-78. doi: 10.1016/j.artmed.2010.02.005. Epub 2010 Apr 3.

PMID:
20371168
11.

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.

Alexopoulou D, Andreopoulos B, Dietze H, Doms A, Gandon F, Hakenberg J, Khelif K, Schroeder M, Wächter T.

BMC Bioinformatics. 2009 Jan 21;10:28. doi: 10.1186/1471-2105-10-28.

12.

A multi-ontology approach to annotate scientific documents based on a modularization technique.

Gomes PC, Moura AM, Cavalcanti MC.

J Biomed Inform. 2015 Dec;58:208-19. doi: 10.1016/j.jbi.2015.09.022. Epub 2015 Oct 20.

13.

[Concepts of ontology-based neuroinformatics and their relations].

Li Y, Yu JF, Yin L, Cui GZ.

Beijing Da Xue Xue Bao. 2009 Apr 18;41(2):230-4. Chinese.

14.

Unintended consequences of existential quantifications in biomedical ontologies.

Boeker M, Tudose I, Hastings J, Schober D, Schulz S.

BMC Bioinformatics. 2011 Nov 24;12:456. doi: 10.1186/1471-2105-12-456.

15.

Spatial location and its relevance for terminological inferences in bio-ontologies.

Schulz S, Markó K, Hahn U.

BMC Bioinformatics. 2007 Apr 20;8:134.

16.

Biomedical ontologies: a functional perspective.

Rubin DL, Shah NH, Noy NF.

Brief Bioinform. 2008 Jan;9(1):75-90. Epub 2007 Dec 12. Review.

PMID:
18077472
17.

A fuzzy-ontology-oriented case-based reasoning framework for semantic diabetes diagnosis.

El-Sappagh S, Elmogy M, Riad AM.

Artif Intell Med. 2015 Nov;65(3):179-208. doi: 10.1016/j.artmed.2015.08.003. Epub 2015 Aug 14.

PMID:
26303105
18.

Applying the functional abnormality ontology pattern to anatomical functions.

Hoehndorf R, Ngonga Ngomo AC, Kelso J.

J Biomed Semantics. 2010 Mar 31;1(1):4. doi: 10.1186/2041-1480-1-4.

19.

Evaluation of research in biomedical ontologies.

Hoehndorf R, Dumontier M, Gkoutos GV.

Brief Bioinform. 2013 Nov;14(6):696-712. doi: 10.1093/bib/bbs053. Epub 2012 Sep 8.

20.

An open annotation ontology for science on web 3.0.

Ciccarese P, Ocana M, Garcia Castro LJ, Das S, Clark T.

J Biomed Semantics. 2011 May 17;2 Suppl 2:S4. doi: 10.1186/2041-1480-2-S2-S4.

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