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Items: 1 to 20 of 67

1.

A QconCAT informatics pipeline for the analysis, visualization and sharing of absolute quantitative proteomics data.

Swainston N, Jameson D, Carroll K.

Proteomics. 2011 Jan;11(2):329-33. doi: 10.1002/pmic.201000454. Epub 2010 Dec 17.

PMID:
21204260
2.

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.

Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.

Mol Cell Proteomics. 2007 Sep;6(9):1621-37. Epub 2007 May 28.

3.

PRISM: a data management system for high-throughput proteomics.

Kiebel GR, Auberry KJ, Jaitly N, Clark DA, Monroe ME, Peterson ES, Tolić N, Anderson GA, Smith RD.

Proteomics. 2006 Mar;6(6):1783-90.

PMID:
16470653
4.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
5.

Design and analysis of quantitative differential proteomics investigations using LC-MS technology.

Bukhman YV, Dharsee M, Ewing R, Chu P, Topaloglou T, Le Bihan T, Goh T, Duewel H, Stewart II, Wisniewski JR, Ng NF.

J Bioinform Comput Biol. 2008 Feb;6(1):107-23.

PMID:
18324749
6.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
7.

Computer applications making rapid advances in high throughput microbial proteomics (HTMP).

Anandkumar B, Haga SW, Wu HF.

Comb Chem High Throughput Screen. 2014 Feb;17(2):173-82. Review.

PMID:
24433413
8.

From proteomics to systems biology of bacterial pathogens: approaches, tools, and applications.

Plikat U, Voshol H, Dangendorf Y, Wiedmann B, Devay P, Müller D, Wirth U, Szustakowski J, Chirn GW, Inverardi B, Puyang X, Brown K, Kamp H, Hoving S, Ruchti A, Brendlen N, Peterson R, Buco J, Oostrum Jv, Peitsch MC.

Proteomics. 2007 Mar;7(6):992-1003.

PMID:
17370256
10.

Trans-proteomic pipeline: a pipeline for proteomic analysis.

Pedrioli PG.

Methods Mol Biol. 2010;604:213-38. doi: 10.1007/978-1-60761-444-9_15.

PMID:
20013374
11.

A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics.

Ahrens CH, Brunner E, Hafen E, Aebersold R, Basler K.

Fly (Austin). 2007 May-Jun;1(3):182-6. Epub 2007 May 4.

PMID:
18820430
12.

Enabling proteomics discovery through visual analysis. The peptide permutation and protein prediction tool.

Havre SL, Singhal M, Payne DA, Lipton MS, Webb-Robertson BJ.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):50-7.

PMID:
15971841
14.

Analysis of mass spectrometry data in proteomics.

Matthiesen R, Jensen ON.

Methods Mol Biol. 2008;453:105-22. doi: 10.1007/978-1-60327-429-6_4.

PMID:
18712299
15.

Proteomics: recent applications and new technologies.

Elrick MM, Walgren JL, Mitchell MD, Thompson DC.

Basic Clin Pharmacol Toxicol. 2006 May;98(5):432-41. Review.

16.

Informatic tools for proteome profiling.

Chakravarti DN, Chakravarti B, Moutsatsos I.

Biotechniques. 2002 Mar;Suppl:4-10, 12-5. Review.

PMID:
11906006
17.

Informatics solutions for high-throughput proteomics.

Topaloglou T.

Drug Discov Today. 2006 Jun;11(11-12):509-16. Review.

PMID:
16713902
18.

TOPP--the OpenMS proteomics pipeline.

Kohlbacher O, Reinert K, Gröpl C, Lange E, Pfeifer N, Schulz-Trieglaff O, Sturm M.

Bioinformatics. 2007 Jan 15;23(2):e191-7.

PMID:
17237091
19.

TOPPView: an open-source viewer for mass spectrometry data.

Sturm M, Kohlbacher O.

J Proteome Res. 2009 Jul;8(7):3760-3. doi: 10.1021/pr900171m.

PMID:
19425593
20.

Protein sequence tags: a novel solution for comparative proteomics.

Kuhn K, Prinz T, Schäfer J, Baumann C, Schärfke M, Kienle S, Schwarz J, Steiner S, Hamon C.

Proteomics. 2005 Jun;5(9):2364-8.

PMID:
15887190

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