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Items: 1 to 20 of 121

1.

Brain MAPS: an automated, accurate and robust brain extraction technique using a template library.

Leung KK, Barnes J, Modat M, Ridgway GR, Bartlett JW, Fox NC, Ourselin S; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2011 Apr 1;55(3):1091-108. doi: 10.1016/j.neuroimage.2010.12.067. Epub 2010 Dec 31.

2.

Automated template-based hippocampal segmentations from MRI: the effects of 1.5T or 3T field strength on accuracy.

Macdonald KE, Leung KK, Bartlett JW, Blair M, Malone IB, Barnes J, Ourselin S, Fox NC; Alzheimer’s Disease Neuroimaging Initiative.

Neuroinformatics. 2014 Jul;12(3):405-12. doi: 10.1007/s12021-013-9217-y.

3.

Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates.

Pipitone J, Park MT, Winterburn J, Lett TA, Lerch JP, Pruessner JC, Lepage M, Voineskos AN, Chakravarty MM; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2014 Nov 1;101:494-512. doi: 10.1016/j.neuroimage.2014.04.054. Epub 2014 Apr 29.

PMID:
24784800
4.

Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location.

Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG.

Hum Brain Mapp. 2006 Feb;27(2):99-113.

5.

Comparing 3T and 1.5T MRI for mapping hippocampal atrophy in the Alzheimer's Disease Neuroimaging Initiative.

Chow N, Hwang KS, Hurtz S, Green AE, Somme JH, Thompson PM, Elashoff DA, Jack CR, Weiner M, Apostolova LG; Alzheimer's Disease Neuroimaging Initiative.

AJNR Am J Neuroradiol. 2015 Apr;36(4):653-60. doi: 10.3174/ajnr.A4228. Epub 2015 Jan 22.

6.

Validated automatic brain extraction of head CT images.

Muschelli J, Ullman NL, Mould WA, Vespa P, Hanley DF, Crainiceanu CM.

Neuroimage. 2015 Jul 1;114:379-85. doi: 10.1016/j.neuroimage.2015.03.074. Epub 2015 Apr 7.

7.

Automated hippocampal segmentation in patients with epilepsy: available free online.

Winston GP, Cardoso MJ, Williams EJ, Burdett JL, Bartlett PA, Espak M, Behr C, Duncan JS, Ourselin S.

Epilepsia. 2013 Dec;54(12):2166-73. doi: 10.1111/epi.12408. Epub 2013 Oct 23.

8.

Knowledge-guided robust MRI brain extraction for diverse large-scale neuroimaging studies on humans and non-human primates.

Wang Y, Nie J, Yap PT, Li G, Shi F, Geng X, Guo L, Shen D; Alzheimer's Disease Neuroimaging Initiative.

PLoS One. 2014 Jan 29;9(1):e77810. doi: 10.1371/journal.pone.0077810. eCollection 2014.

9.

Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease.

Leung KK, Barnes J, Ridgway GR, Bartlett JW, Clarkson MJ, Macdonald K, Schuff N, Fox NC, Ourselin S; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2010 Jul 15;51(4):1345-59. doi: 10.1016/j.neuroimage.2010.03.018. Epub 2010 Mar 15.

10.

Learning-based meta-algorithm for MRI brain extraction.

Shi F, Wang L, Gilmore JH, Lin W, Shen D.

Med Image Comput Comput Assist Interv. 2011;14(Pt 3):313-21.

PMID:
22003714
11.

Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis.

Popescu V, Battaglini M, Hoogstrate WS, Verfaillie SC, Sluimer IC, van Schijndel RA, van Dijk BW, Cover KS, Knol DL, Jenkinson M, Barkhof F, de Stefano N, Vrenken H; MAGNIMS Study Group.

Neuroimage. 2012 Jul 16;61(4):1484-94. doi: 10.1016/j.neuroimage.2012.03.074. Epub 2012 Mar 30.

PMID:
22484407
12.

A multi-atlas based method for automated anatomical rat brain MRI segmentation and extraction of PET activity.

Lancelot S, Roche R, Slimen A, Bouillot C, Levigoureux E, Langlois JB, Zimmer L, Costes N.

PLoS One. 2014 Oct 17;9(10):e109113. doi: 10.1371/journal.pone.0109113. eCollection 2014.

13.

The impact of skull-stripping and radio-frequency bias correction on grey-matter segmentation for voxel-based morphometry.

Acosta-Cabronero J, Williams GB, Pereira JM, Pengas G, Nestor PJ.

Neuroimage. 2008 Feb 15;39(4):1654-65. Epub 2007 Nov 12.

PMID:
18065243
14.

A multi-atlas based method for automated anatomical Macaca fascicularis brain MRI segmentation and PET kinetic extraction.

Ballanger B, Tremblay L, Sgambato-Faure V, Beaudoin-Gobert M, Lavenne F, Le Bars D, Costes N.

Neuroimage. 2013 Aug 15;77:26-43. doi: 10.1016/j.neuroimage.2013.03.029. Epub 2013 Mar 26.

PMID:
23537938
15.

Reproducibility of hippocampal atrophy rates measured with manual, FreeSurfer, AdaBoost, FSL/FIRST and the MAPS-HBSI methods in Alzheimer's disease.

Cover KS, van Schijndel RA, Versteeg A, Leung KK, Mulder ER, Jong RA, Visser PJ, Redolfi A, Revillard J, Grenier B, Manset D, Damangir S, Bosco P, Vrenken H, van Dijk BW, Frisoni GB, Barkhof F; Alzheimer's Disease Neuroimaging Initiative, neuGRID.

Psychiatry Res. 2016 Jun 30;252:26-35. doi: 10.1016/j.pscychresns.2016.04.006. Epub 2016 May 11.

PMID:
27179313
16.

An accurate skull stripping method based on simplex meshes and histogram analysis for magnetic resonance images.

Galdames FJ, Jaillet F, Perez CA.

J Neurosci Methods. 2012;206(2):103-19. doi: 10.1016/j.jneumeth.2012.02.017. Epub 2012 Feb 23.

PMID:
22387261
17.

Analysis and validation of automated skull stripping tools: a validation study based on 296 MR images from the Honolulu Asia aging study.

Hartley SW, Scher AI, Korf ES, White LR, Launer LJ.

Neuroimage. 2006 May 1;30(4):1179-86. Epub 2006 Jan 11.

PMID:
16376107
18.

Robust skull stripping of clinical glioblastoma multiforme data.

Speier W, Iglesias JE, El-Kara L, Tu Z, Arnold C.

Med Image Comput Comput Assist Interv. 2011;14(Pt 3):659-66.

PMID:
22003756
19.

STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation.

Jorge Cardoso M, Leung K, Modat M, Keihaninejad S, Cash D, Barnes J, Fox NC, Ourselin S; Alzheimer’s Disease Neuroimaging Initiative.

Med Image Anal. 2013 Aug;17(6):671-84. doi: 10.1016/j.media.2013.02.006. Epub 2013 Mar 1.

20.

A learning-based wrapper method to correct systematic errors in automatic image segmentation: consistently improved performance in hippocampus, cortex and brain segmentation.

Wang H, Das SR, Suh JW, Altinay M, Pluta J, Craige C, Avants B, Yushkevich PA; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2011 Apr 1;55(3):968-85. doi: 10.1016/j.neuroimage.2011.01.006. Epub 2011 Jan 13.

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