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Items: 1 to 20 of 197

1.

Dragon exploratory system on hepatitis C virus (DESHCV).

Kwofie SK, Radovanovic A, Sundararajan VS, Maqungo M, Christoffels A, Bajic VB.

Infect Genet Evol. 2011 Jun;11(4):734-9. doi: 10.1016/j.meegid.2010.12.006. Epub 2010 Dec 29.

PMID:
21194573
2.

HCVpro: hepatitis C virus protein interaction database.

Kwofie SK, Schaefer U, Sundararajan VS, Bajic VB, Christoffels A.

Infect Genet Evol. 2011 Dec;11(8):1971-7. doi: 10.1016/j.meegid.2011.09.001. Epub 2011 Sep 9.

PMID:
21930248
3.

Information exploration system for sickle cell disease and repurposing of hydroxyfasudil.

Essack M, Radovanovic A, Bajic VB.

PLoS One. 2013 Jun 10;8(6):e65190. doi: 10.1371/journal.pone.0065190. Print 2013.

4.

DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility.

Dawe AS, Radovanovic A, Kaur M, Sagar S, Seshadri SV, Schaefer U, Kamau AA, Christoffels A, Bajic VB.

Reprod Toxicol. 2012 Jan;33(1):99-105. doi: 10.1016/j.reprotox.2011.12.007. Epub 2011 Dec 17.

PMID:
22198179
5.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

6.

DDEC: Dragon database of genes implicated in esophageal cancer.

Essack M, Radovanovic A, Schaefer U, Schmeier S, Seshadri SV, Christoffels A, Kaur M, Bajic VB.

BMC Cancer. 2009 Jul 6;9:219. doi: 10.1186/1471-2407-9-219.

7.

DDPC: Dragon Database of Genes associated with Prostate Cancer.

Maqungo M, Kaur M, Kwofie SK, Radovanovic A, Schaefer U, Schmeier S, Oppon E, Christoffels A, Bajic VB.

Nucleic Acids Res. 2011 Jan;39(Database issue):D980-5. doi: 10.1093/nar/gkq849. Epub 2010 Sep 29.

8.
9.

The Los Alamos hepatitis C sequence database.

Kuiken C, Yusim K, Boykin L, Richardson R.

Bioinformatics. 2005 Feb 1;21(3):379-84. Epub 2004 Sep 17.

PMID:
15377502
10.

HCVDB: hepatitis C virus sequences database.

Combet C, Penin F, Geourjon C, Deléage G.

Appl Bioinformatics. 2004;3(4):237-40.

PMID:
15702954
11.

Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.

Pan H, Zuo L, Choudhary V, Zhang Z, Leow SH, Chong FT, Huang Y, Ong VW, Mohanty B, Tan SL, Krishnan SP, Bajic VB.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W230-4.

12.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

13.

Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists.

Bajic VB, Veronika M, Veladandi PS, Meka A, Heng MW, Rajaraman K, Pan H, Swarup S.

Plant Physiol. 2005 Aug;138(4):1914-25.

14.

PIE: an online prediction system for protein-protein interactions from text.

Kim S, Shin SY, Lee IH, Kim SJ, Sriram R, Zhang BT.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W411-5. doi: 10.1093/nar/gkn281. Epub 2008 May 28.

15.

Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature.

Chowdhary R, Tan SL, Zhang J, Karnik S, Bajic VB, Liu JS.

PLoS One. 2012;7(4):e34480. doi: 10.1371/journal.pone.0034480. Epub 2012 Apr 6.

16.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

17.

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.

Barbosa-Silva A, Fontaine JF, Donnard ER, Stussi F, Ortega JM, Andrade-Navarro MA.

BMC Bioinformatics. 2011 Nov 9;12:435. doi: 10.1186/1471-2105-12-435.

18.

Analysis of biological processes and diseases using text mining approaches.

Krallinger M, Leitner F, Valencia A.

Methods Mol Biol. 2010;593:341-82. doi: 10.1007/978-1-60327-194-3_16. Review.

PMID:
19957157
19.

iProLINK: an integrated protein resource for literature mining.

Hu ZZ, Mani I, Hermoso V, Liu H, Wu CH.

Comput Biol Chem. 2004 Dec;28(5-6):409-16.

PMID:
15556482
20.

PubMed-EX: a web browser extension to enhance PubMed search with text mining features.

Tsai RT, Dai HJ, Lai PT, Huang CH.

Bioinformatics. 2009 Nov 15;25(22):3031-2. doi: 10.1093/bioinformatics/btp475. Epub 2009 Aug 4.

PMID:
19654114

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