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Items: 1 to 20 of 96

1.

Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks.

Johnson ME, Hummer G.

Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):603-8. doi: 10.1073/pnas.1010954108. Epub 2010 Dec 27.

2.

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5:24.

3.

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.

Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M.

Bioinformatics. 2005 Jun;21 Suppl 1:i302-10.

4.

Protein interaction networks by proteome peptide scanning.

Landgraf C, Panni S, Montecchi-Palazzi L, Castagnoli L, Schneider-Mergener J, Volkmer-Engert R, Cesareni G.

PLoS Biol. 2004 Jan;2(1):E14. Epub 2004 Jan 20.

5.

Exploiting amino acid composition for predicting protein-protein interactions.

Roy S, Martinez D, Platero H, Lane T, Werner-Washburne M.

PLoS One. 2009 Nov 20;4(11):e7813. doi: 10.1371/journal.pone.0007813.

6.

A kinetic model of the evolution of a protein interaction network.

Pawlowski PH, Kaczanowski S, Zielenkiewicz P.

BMC Genomics. 2013 Mar 14;14:172. doi: 10.1186/1471-2164-14-172.

7.

Evolutionary capacitance and control of protein stability in protein-protein interaction networks.

Dixit PD, Maslov S.

PLoS Comput Biol. 2013 Apr;9(4):e1003023. doi: 10.1371/journal.pcbi.1003023. Epub 2013 Apr 4.

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9.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
10.

Oligomeric protein structure networks: insights into protein-protein interactions.

Brinda KV, Vishveshwara S.

BMC Bioinformatics. 2005 Dec 10;6:296.

11.

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.

Hsing M, Byler KG, Cherkasov A.

BMC Syst Biol. 2008 Sep 16;2:80. doi: 10.1186/1752-0509-2-80.

12.

Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.

Agrafioti I, Swire J, Abbott J, Huntley D, Butcher S, Stumpf MP.

BMC Evol Biol. 2005 Mar 18;5:23.

13.

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M.

Genome Res. 2004 Jun;14(6):1107-18.

14.

C. elegans: an invaluable model organism for the proteomics studies of the cholesterol-mediated signaling pathway.

Paik YK, Jeong SK, Lee EY, Jeong PY, Shim YH.

Expert Rev Proteomics. 2006 Aug;3(4):439-53. Review.

PMID:
16901202
15.

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions.

Tackett AJ, DeGrasse JA, Sekedat MD, Oeffinger M, Rout MP, Chait BT.

J Proteome Res. 2005 Sep-Oct;4(5):1752-6.

PMID:
16212429
16.

Effect of sampling on topology predictions of protein-protein interaction networks.

Han JD, Dupuy D, Bertin N, Cusick ME, Vidal M.

Nat Biotechnol. 2005 Jul;23(7):839-44.

PMID:
16003372
17.

Proteome-wide protein interaction measurements of bacterial proteins of unknown function.

Meier M, Sit RV, Quake SR.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):477-82. doi: 10.1073/pnas.1210634110. Epub 2012 Dec 24.

18.

Evolution versus "intelligent design": comparing the topology of protein-protein interaction networks to the Internet.

Yang Q, Siganos G, Faloutsos M, Lonardi S.

Comput Syst Bioinformatics Conf. 2006:299-310.

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