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Items: 1 to 20 of 84

1.

The genome of Theobroma cacao.

Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C.

Nat Genet. 2011 Feb;43(2):101-8. doi: 10.1038/ng.736. Epub 2010 Dec 26.

PMID:
21186351
2.

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN.

Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53.

3.

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions.

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S, Lanaud C.

BMC Genomics. 2008 Oct 30;9:512. doi: 10.1186/1471-2164-9-512.

4.

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

Saski CA, Feltus FA, Staton ME, Blackmon BP, Ficklin SP, Kuhn DN, Schnell RJ, Shapiro H, Motamayor JC.

BMC Genomics. 2011 Aug 16;12:413. doi: 10.1186/1471-2164-12-413.

5.

The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.

Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM, Lanaud C.

BMC Genomics. 2017 Sep 15;18(1):730. doi: 10.1186/s12864-017-4120-9.

6.

Genome-wide analysis reveals divergent patterns of gene expression during zygotic and somatic embryo maturation of Theobroma cacao L., the chocolate tree.

Maximova SN, Florez S, Shen X, Niemenak N, Zhang Y, Curtis W, Guiltinan MJ.

BMC Plant Biol. 2014 Jul 16;14:185. doi: 10.1186/1471-2229-14-185.

7.

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Feltus FA, Saski CA, Mockaitis K, Haiminen N, Parida L, Smith Z, Ford J, Staton ME, Ficklin SP, Blackmon BP, Cheng CH, Schnell RJ, Kuhn DN, Motamayor JC.

BMC Genomics. 2011 Jul 27;12:379. doi: 10.1186/1471-2164-12-379.

8.

Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species.

Sveinsson S, Gill N, Kane NC, Cronk Q.

BMC Genomics. 2013 Jul 24;14:502. doi: 10.1186/1471-2164-14-502.

9.

Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae).

da Silva RA, Souza G, Lemos LS, Lopes UV, Patrocínio NG, Alves RM, Marcellino LH, Clement D, Micheli F, Gramacho KP.

PLoS One. 2017 Feb 10;12(2):e0170799. doi: 10.1371/journal.pone.0170799. eCollection 2017.

10.

Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.

Livingstone D, Royaert S, Stack C, Mockaitis K, May G, Farmer A, Saski C, Schnell R, Kuhn D, Motamayor JC.

DNA Res. 2015 Aug;22(4):279-91. doi: 10.1093/dnares/dsv009. Epub 2015 Jun 11.

11.

The genome of the tropical tree Theobroma cacao L.

Couch JA, Zintel HA, Fritz PJ.

Mol Gen Genet. 1993 Feb;237(1-2):123-8.

PMID:
8455550
12.

Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization.

Fister AS, Mejia LC, Zhang Y, Herre EA, Maximova SN, Guiltinan MJ.

BMC Genomics. 2016 May 17;17:363. doi: 10.1186/s12864-016-2693-3. Erratum in: BMC Genomics. 2016 Sep 7;17(1):715.

13.

Adding value to cocoa (Theobroma cacao L.) germplasm information with domestication history and admixture mapping.

Marcano M, Pugh T, Cros E, Morales S, Portillo Páez EA, Courtois B, Glaszmann JC, Engels JM, Phillips W, Astorga C, Risterucci AM, Fouet O, González V, Rosenberg K, Vallat I, Dagert M, Lanaud C.

Theor Appl Genet. 2007 Mar;114(5):877-84. Epub 2007 Jan 25.

PMID:
17252253
14.

Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA.

Kane N, Sveinsson S, Dempewolf H, Yang JY, Zhang D, Engels JM, Cronk Q.

Am J Bot. 2012 Feb;99(2):320-9. doi: 10.3732/ajb.1100570. Epub 2012 Feb 1.

15.

Gene discovery and microarray analysis of cacao (Theobroma cacao L.) varieties.

Jones PG, Allaway D, Gilmour DM, Harris C, Rankin D, Retzel ER, Jones CA.

Planta. 2002 Dec;216(2):255-64. Epub 2002 Oct 30.

PMID:
12447539
16.

Mapping QTL for yield components, vigor, and resistance to Phytophthora palmivora in Theobroma cacao L.

Clement D, Risterucci AM, Motamayor JC, N'Goran J, Lanaud C.

Genome. 2003 Apr;46(2):204-12.

PMID:
12723036
17.

Out of the Amazon: Theobroma cacao enters the genomic era.

Bennett AB.

Trends Plant Sci. 2003 Dec;8(12):561-3.

PMID:
14659701
18.

Functional analysis of the Theobroma cacao NPR1 gene in Arabidopsis.

Shi Z, Maximova SN, Liu Y, Verica J, Guiltinan MJ.

BMC Plant Biol. 2010 Nov 15;10:248. doi: 10.1186/1471-2229-10-248.

19.
20.

ARG-based genome-wide analysis of cacao cultivars.

Utro F, Cornejo OE, Livingstone D, Motamayor JC, Parida L.

BMC Bioinformatics. 2012;13 Suppl 19:S17. doi: 10.1186/1471-2105-13-S19-S17. Epub 2012 Dec 19.

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