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Items: 1 to 20 of 96

1.

Defining the transcriptome and proteome in three functionally different human cell lines.

Lundberg E, Fagerberg L, Klevebring D, Matic I, Geiger T, Cox J, Algenäs C, Lundeberg J, Mann M, Uhlen M.

Mol Syst Biol. 2010 Dec 21;6:450. doi: 10.1038/msb.2010.106.

2.

RNA deep sequencing as a tool for selection of cell lines for systematic subcellular localization of all human proteins.

Danielsson F, Wiking M, Mahdessian D, Skogs M, Ait Blal H, Hjelmare M, Stadler C, Uhlén M, Lundberg E.

J Proteome Res. 2013 Jan 4;12(1):299-307. doi: 10.1021/pr3009308. Epub 2012 Dec 20.

PMID:
23227862
3.

Analysis of transcript and protein overlap in a human osteosarcoma cell line.

Klevebring D, Fagerberg L, Lundberg E, Emanuelsson O, Uhlén M, Lundeberg J.

BMC Genomics. 2010 Dec 2;11:684. doi: 10.1186/1471-2164-11-684.

4.

Comparative proteome, transcriptome, and genome analysis of a gonadal and an extragonadal germ cell tumor cell line.

Glaesener S, Honecker F, Veltman IM, Gillis AJ, Rohlfing T, Streichert T, Otto B, Brummendorf TH, Looijenga LH, Bokemeyer C, Balabanov S.

J Proteome Res. 2008 Sep;7(9):3890-9. doi: 10.1021/pr800173g. Epub 2008 Jul 22.

PMID:
18642941
5.

Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal.

O'Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs SP.

Mol Cell Proteomics. 2010 Oct;9(10):2238-51. doi: 10.1074/mcp.M110.000281. Epub 2010 May 31.

6.

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.

Nature. 2008 Oct 30;455(7217):1251-4. doi: 10.1038/nature07341. Epub 2008 Sep 28.

PMID:
18820680
7.

First insight into the human liver proteome from PROTEOME(SKY)-LIVER(Hu) 1.0, a publicly available database.

Chinese Human Liver Proteome Profiling Consortium.

J Proteome Res. 2010 Jan;9(1):79-94. doi: 10.1021/pr900532r.

PMID:
19653699
8.

RNA- and antibody-based profiling of the human proteome with focus on chromosome 19.

Stadler C, Fagerberg L, Sivertsson Å, Oksvold P, Zwahlen M, Hallström BM, Lundberg E, Uhlén M.

J Proteome Res. 2014 Apr 4;13(4):2019-27. doi: 10.1021/pr401156g. Epub 2014 Mar 12.

PMID:
24579871
9.

Deep proteome and transcriptome mapping of a human cancer cell line.

Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, Pääbo S, Mann M.

Mol Syst Biol. 2011 Nov 8;7:548. doi: 10.1038/msb.2011.81.

10.

Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP).

Fagerberg L, Oksvold P, Skogs M, Algenäs C, Lundberg E, Pontén F, Sivertsson A, Odeberg J, Klevebring D, Kampf C, Asplund A, Sjöstedt E, Al-Khalili Szigyarto C, Edqvist PH, Olsson I, Rydberg U, Hudson P, Ottosson Takanen J, Berling H, Björling L, Tegel H, Rockberg J, Nilsson P, Navani S, Jirström K, Mulder J, Schwenk JM, Zwahlen M, Hober S, Forsberg M, von Feilitzen K, Uhlén M.

J Proteome Res. 2013 Jun 7;12(6):2439-48. doi: 10.1021/pr300924j. Epub 2012 Dec 31.

PMID:
23276153
11.

Preparation of planar retinal specimens: verification by histology, mRNA profiling, and proteome analysis.

McKay GJ, Campbell L, Oliver M, Brockbank S, Simpson DA, Curry WJ.

Mol Vis. 2004 Mar 29;10:240-7.

12.

Systematic investigation of global coordination among mRNA and protein in cellular society.

Wang H, Wang Q, Pape UJ, Shen B, Huang J, Wu B, Li X.

BMC Genomics. 2010 Jun 9;11:364. doi: 10.1186/1471-2164-11-364.

13.

Adiponutrin, a transmembrane protein corresponding to a novel dietary- and obesity-linked mRNA specifically expressed in the adipose lineage.

Baulande S, Lasnier F, Lucas M, Pairault J.

J Biol Chem. 2001 Sep 7;276(36):33336-44. Epub 2001 Jun 28.

14.

Expression and localization of leucine-rich B7 protein in human ocular tissues.

Tasheva ES, An K, Boyle DL, Conrad GW.

Mol Vis. 2005 Jul 6;11:452-60.

15.

Differential expression of membrane-type matrix metalloproteinase and its correlation with gelatinase A activation in human malignant brain tumors in vivo and in vitro.

Yamamoto M, Mohanam S, Sawaya R, Fuller GN, Seiki M, Sato H, Gokaslan ZL, Liotta LA, Nicolson GL, Rao JS.

Cancer Res. 1996 Jan 15;56(2):384-92.

16.

Antibody-based protein profiling of the human chromosome 21.

Uhlén M, Oksvold P, Älgenäs C, Hamsten C, Fagerberg L, Klevebring D, Lundberg E, Odeberg J, Pontén F, Kondo T, Sivertsson Å.

Mol Cell Proteomics. 2012 Mar;11(3):M111.013458. doi: 10.1074/mcp.M111.013458. Epub 2011 Oct 31.

17.

A global view of gene activity at the flowering transition phase in precocious trifoliate orange and its wild-type [Poncirus trifoliata (L.) Raf.] by transcriptome and proteome analysis.

Ai XY, Lin G, Sun LM, Hu CG, Guo WW, Deng XX, Zhang JZ.

Gene. 2012 Nov 15;510(1):47-58. doi: 10.1016/j.gene.2012.07.090. Epub 2012 Aug 24.

PMID:
22922390
18.

Spanish human proteome project: dissection of chromosome 16.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ.

J Proteome Res. 2013 Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12.

PMID:
23234512
19.

Proteome profiling of flax (Linum usitatissimum) seed: characterization of functional metabolic pathways operating during seed development.

Barvkar VT, Pardeshi VC, Kale SM, Kadoo NY, Giri AP, Gupta VS.

J Proteome Res. 2012 Dec 7;11(12):6264-76. doi: 10.1021/pr300984r. Epub 2012 Nov 27.

PMID:
23153172
20.

Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function.

Shin BK, Wang H, Yim AM, Le Naour F, Brichory F, Jang JH, Zhao R, Puravs E, Tra J, Michael CW, Misek DE, Hanash SM.

J Biol Chem. 2003 Feb 28;278(9):7607-16. Epub 2002 Dec 18.

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