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Items: 1 to 20 of 58

1.

Fan-out in gene regulatory networks.

Kim KH, Sauro HM.

J Biol Eng. 2010 Dec 17;4:16. doi: 10.1186/1754-1611-4-16.

2.

Measuring retroactivity from noise in gene regulatory networks.

Kim KH, Sauro HM.

Biophys J. 2011 Mar 2;100(5):1167-77. doi: 10.1016/j.bpj.2010.12.3737.

3.

Stochastic modular analysis for gene circuits: interplay among retroactivity, nonlinearity, and stochasticity.

Kim KH, Sauro HM.

Methods Mol Biol. 2015;1244:287-97. doi: 10.1007/978-1-4939-1878-2_14.

PMID:
25487103
5.

Mammalian synthetic biology: engineering of sophisticated gene networks.

Greber D, Fussenegger M.

J Biotechnol. 2007 Jul 15;130(4):329-45. Epub 2007 May 24. Review.

PMID:
17602777
6.

Retroactivity controls the temporal dynamics of gene transcription.

Jayanthi S, Nilgiriwala KS, Del Vecchio D.

ACS Synth Biol. 2013 Aug 16;2(8):431-41. doi: 10.1021/sb300098w. Epub 2013 Mar 7.

PMID:
23654274
7.
8.

Refined method for the genomic integration of complex synthetic circuits.

Ying BW, Ito Y, Shimizu Y, Yomo T.

J Biosci Bioeng. 2010 Nov;110(5):529-36. doi: 10.1016/j.jbiosc.2010.05.014. Epub 2010 Jun 20.

PMID:
20646959
9.

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.

Kel AE, Kel-Margoulis OV, Farnham PJ, Bartley SM, Wingender E, Zhang MQ.

J Mol Biol. 2001 May 25;309(1):99-120.

PMID:
11491305
10.
11.
12.

Engineering RNAi circuits.

Benenson Y.

Methods Enzymol. 2011;497:187-205. doi: 10.1016/B978-0-12-385075-1.00008-1.

PMID:
21601087
13.

BioLogic gates enable logical transcription control in mammalian cells.

Kramer BP, Fischer C, Fussenegger M.

Biotechnol Bioeng. 2004 Aug 20;87(4):478-84.

PMID:
15286985
14.

Modular composition of gene transcription networks.

Gyorgy A, Del Vecchio D.

PLoS Comput Biol. 2014 Mar 13;10(3):e1003486. doi: 10.1371/journal.pcbi.1003486. eCollection 2014 Mar.

15.

Defining transcription modules using large-scale gene expression data.

Ihmels J, Bergmann S, Barkai N.

Bioinformatics. 2004 Sep 1;20(13):1993-2003. Epub 2004 Mar 25.

PMID:
15044247
17.

Retroactivity in the Context of Modularly Structured Biomolecular Systems.

Pantoja-Hernández L, Martínez-García JC.

Front Bioeng Biotechnol. 2015 Jun 17;3:85. doi: 10.3389/fbioe.2015.00085. eCollection 2015. Review.

18.

Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits.

Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW, Cui Y.

Hum Mol Genet. 2006 Feb 1;15(3):481-92. Epub 2005 Dec 21.

PMID:
16371421
19.

Quantifying modularity in the evolution of biomolecular systems.

Snel B, Huynen MA.

Genome Res. 2004 Mar;14(3):391-7.

20.

Engineering input/output nodes in prokaryotic regulatory circuits.

de Las Heras A, Carreño CA, Martínez-García E, de Lorenzo V.

FEMS Microbiol Rev. 2010 Sep;34(5):842-65. doi: 10.1111/j.1574-6976.2010.00238.x. Epub 2010 Jun 7. Review.

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