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Items: 1 to 20 of 138

1.

Algorithms and semantic infrastructure for mutation impact extraction and grounding.

Laurila JB, Naderi N, Witte R, Riazanov A, Kouznetsov A, Baker CJ.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S24. doi: 10.1186/1471-2164-11-S4-S24.

2.

Automated extraction and semantic analysis of mutation impacts from the biomedical literature.

Naderi N, Witte R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S10. doi: 10.1186/1471-2164-13-S4-S10.

3.

Deploying mutation impact text-mining software with the SADI Semantic Web Services framework.

Riazanov A, Laurila JB, Baker CJ.

BMC Bioinformatics. 2011;12 Suppl 4:S6. doi: 10.1186/1471-2105-12-S4-S6. Epub 2011 Jul 5.

4.
5.

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.

Naderi N, Kappler T, Baker CJ, Witte R.

Bioinformatics. 2011 Oct 1;27(19):2721-9. doi: 10.1093/bioinformatics/btr452. Epub 2011 Aug 9.

PMID:
21828087
6.

Extraction of human kinase mutations from literature, databases and genotyping studies.

Krallinger M, Izarzugaza JM, Rodriguez-Penagos C, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S1. doi: 10.1186/1471-2105-10-S8-S1.

7.

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.

Winnenburg R, Plake C, Schroeder M.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S3. doi: 10.1186/1471-2105-10-S8-S3.

8.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

9.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

10.

Automatic extraction of protein point mutations using a graph bigram association.

Lee LC, Horn F, Cohen FE.

PLoS Comput Biol. 2007 Feb 2;3(2):e16.

11.

A semantic web ontology for small molecules and their biological targets.

Choi J, Davis MJ, Newman AF, Ragan MA.

J Chem Inf Model. 2010 May 24;50(5):732-41. doi: 10.1021/ci900461j.

PMID:
20405959
12.

A workflow for mutation extraction and structure annotation.

Kanagasabai R, Choo KH, Ranganathan S, Baker CJ.

J Bioinform Comput Biol. 2007 Dec;5(6):1319-37.

PMID:
18172931
13.

EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts.

Yeniterzi S, Sezerman U.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S2. doi: 10.1186/1471-2105-10-S8-S2.

14.

Protein structures and information extraction from biological texts: the PASTA system.

Gaizauskas R, Demetriou G, Artymiuk PJ, Willett P.

Bioinformatics. 2003 Jan;19(1):135-43.

PMID:
12499303
15.

Enhanced semantic access to the protein engineering literature using ontologies populated by text mining.

Witte R, Kappler T, Baker CJ.

Int J Bioinform Res Appl. 2007;3(3):389-413.

PMID:
18048198
16.

A lazy data mining approach for protein classification.

Merschmann L, Plastino A.

IEEE Trans Nanobioscience. 2007 Mar;6(1):36-42.

PMID:
17393848
17.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

18.

Ontology-centric integration and navigation of the dengue literature.

Rajapakse M, Kanagasabai R, Ang WT, Veeramani A, Schreiber MJ, Baker CJ.

J Biomed Inform. 2008 Oct;41(5):806-15. doi: 10.1016/j.jbi.2008.04.004. Epub 2008 May 5.

19.

Extraction of protein interaction information from unstructured text using a context-free grammar.

Temkin JM, Gilder MR.

Bioinformatics. 2003 Nov 1;19(16):2046-53.

PMID:
14594709
20.

Terminological resources for text mining over biomedical scientific literature.

Rinaldi F, Kaljurand K, Sætre R.

Artif Intell Med. 2011 Jun;52(2):107-14. doi: 10.1016/j.artmed.2011.04.011. Epub 2011 Jun 11.

PMID:
21652190

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