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Taking root: enduring effect of rhizosphere bacterial colonization in mangroves.

Gomes NC, Cleary DF, Pinto FN, Egas C, Almeida A, Cunha A, Mendonça-Hagler LC, Smalla K.

PLoS One. 2010 Nov 22;5(11):e14065. doi: 10.1371/journal.pone.0014065.


Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples.

Pires AC, Cleary DF, Almeida A, Cunha A, Dealtry S, Mendonça-Hagler LC, Smalla K, Gomes NC.

Appl Environ Microbiol. 2012 Aug;78(16):5520-8. doi: 10.1128/AEM.00386-12. Epub 2012 Jun 1.


Bacterial structure and characterization of plant growth promoting and oil degrading bacteria from the rhizospheres of mangrove plants.

do Carmo FL, dos Santos HF, Martins EF, van Elsas JD, Rosado AS, Peixoto RS.

J Microbiol. 2011 Aug;49(4):535-43. doi: 10.1007/s12275-011-0528-0. Epub 2011 Sep 2.


Illumina sequencing of 16S rRNA tag revealed spatial variations of bacterial communities in a mangrove wetland.

Jiang XT, Peng X, Deng GH, Sheng HF, Wang Y, Zhou HW, Tam NF.

Microb Ecol. 2013 Jul;66(1):96-104. doi: 10.1007/s00248-013-0238-8. Epub 2013 May 7.


Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.

Cleary DF, Smalla K, Mendonça-Hagler LC, Gomes NC.

PLoS One. 2012;7(1):e29380. doi: 10.1371/journal.pone.0029380. Epub 2012 Jan 11.


Diversity of endophytic and rhizoplane bacterial communities associated with exotic Spartina alterniflora and native mangrove using Illumina amplicon sequencing.

Hong Y, Liao D, Hu A, Wang H, Chen J, Khan S, Su J, Li H.

Can J Microbiol. 2015 Oct;61(10):723-33. doi: 10.1139/cjm-2015-0079. Epub 2015 Jul 7.


Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms.

Kowalchuk GA, Buma DS, de Boer W, Klinkhamer PG, van Veen JA.

Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):509-20.


Dependence of phenanthrene dissipation in mangrove sediment on the distance to root surface of Kandelia obovata L.

Fang Y, Yan CL, Du JN, Yu JY.

Int J Phytoremediation. 2012 Jul;14(6):596-608.


Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia.

Gomes NC, Flocco CG, Costa R, Junca H, Vilchez R, Pieper DH, Krögerrecklenfort E, Paranhos R, Mendonça-Hagler LC, Smalla K.

FEMS Microbiol Ecol. 2010 Nov;74(2):276-90. doi: 10.1111/j.1574-6941.2010.00962.x. Epub 2010 Aug 31.


Mangrove bacterial diversity and the impact of oil contamination revealed by pyrosequencing: bacterial proxies for oil pollution.

dos Santos HF, Cury JC, do Carmo FL, dos Santos AL, Tiedje J, van Elsas JD, Rosado AS, Peixoto RS.

PLoS One. 2011 Mar 2;6(3):e16943. doi: 10.1371/journal.pone.0016943.


Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.

Oliveira V, Gomes NC, Cleary DF, Almeida A, Silva AM, Simões MM, Silva H, Cunha Â.

FEMS Microbiol Ecol. 2014 Dec;90(3):647-62. doi: 10.1111/1574-6941.12425. Epub 2014 Oct 2.


The bacterial diversity in a Brazilian non-disturbed mangrove sediment.

Dias AC, Andreote FD, Rigonato J, Fiore MF, Melo IS, Araújo WL.

Antonie Van Leeuwenhoek. 2010 Nov;98(4):541-51. doi: 10.1007/s10482-010-9471-z. Epub 2010 Jun 20.


Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments.

Li M, Cao H, Hong Y, Gu JD.

Appl Microbiol Biotechnol. 2011 Feb;89(4):1243-54. doi: 10.1007/s00253-010-2929-0. Epub 2010 Oct 16.


Distinctive bacterial communities in the rhizoplane of four tropical tree species.

Oh YM, Kim M, Lee-Cruz L, Lai-Hoe A, Go R, Ainuddin N, Rahim RA, Shukor N, Adams JM.

Microb Ecol. 2012 Nov;64(4):1018-27. doi: 10.1007/s00248-012-0082-2. Epub 2012 Jul 6.


Mangrove bacterial richness.

Gomes NC, Cleary DF, Calado R, Costa R.

Commun Integr Biol. 2011 Jul;4(4):419-23. doi: 10.4161/cib.4.4.15253. Epub 2011 Jul 1.


Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments.

Dias AC, Pereira e Silva Mde C, Cotta SR, Dini-Andreote F, Soares FL Jr, Salles JF, Azevedo JL, van Elsas JD, Andreote FD.

Appl Environ Microbiol. 2012 Nov;78(22):7960-7. doi: 10.1128/AEM.02273-12. Epub 2012 Aug 31.


Exploring the diversity of bacterial communities in sediments of urban mangrove forests.

Marcial Gomes NC, Borges LR, Paranhos R, Pinto FN, Mendonça-Hagler LC, Smalla K.

FEMS Microbiol Ecol. 2008 Oct;66(1):96-109. doi: 10.1111/j.1574-6941.2008.00519.x. Epub 2008 Jun 4.


Diversity of ndo genes in mangrove sediments exposed to different sources of polycyclic aromatic hydrocarbon pollution.

Gomes NC, Borges LR, Paranhos R, Pinto FN, Krögerrecklenfort E, Mendonça-Hagler LC, Smalla K.

Appl Environ Microbiol. 2007 Nov;73(22):7392-9. Epub 2007 Sep 28.


Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.

Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW.

Appl Environ Microbiol. 2011 Sep;77(17):5934-44. doi: 10.1128/AEM.05255-11. Epub 2011 Jul 15.


Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed.

Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G.

Appl Environ Microbiol. 2001 Oct;67(10):4742-51.

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