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Items: 1 to 20 of 196

1.

Accounting for conformational entropy in predicting binding free energies of protein-protein interactions.

Kamisetty H, Ramanathan A, Bailey-Kellogg C, Langmead CJ.

Proteins. 2011 Feb;79(2):444-62. doi: 10.1002/prot.22894.

PMID:
21120864
2.

Incorporating receptor flexibility in the molecular design of protein interfaces.

Li L, Liang S, Pilcher MM, Meroueh SO.

Protein Eng Des Sel. 2009 Sep;22(9):575-86. doi: 10.1093/protein/gzp042. Epub 2009 Jul 30.

PMID:
19643976
3.

Empirical calculation of the relative free energies of peptide binding to the molecular chaperone DnaK.

Kasper P, Christen P, Gehring H.

Proteins. 2000 Aug 1;40(2):185-92.

PMID:
10842335
6.
7.
9.

A fast empirical approach to binding free energy calculations based on protein interface information.

Ma XH, Wang CX, Li CH, Chen WZ.

Protein Eng. 2002 Aug;15(8):677-81.

PMID:
12364582
10.

Computational protein design with side-chain conformational entropy.

Sciretti D, Bruscolini P, Pelizzola A, Pretti M, Jaramillo A.

Proteins. 2009 Jan;74(1):176-91. doi: 10.1002/prot.22145.

PMID:
18618711
13.

The magnitude of the backbone conformational entropy change in protein folding.

D'Aquino JA, Gómez J, Hilser VJ, Lee KH, Amzel LM, Freire E.

Proteins. 1996 Jun;25(2):143-56.

PMID:
8811731
14.

Develop and test a solvent accessible surface area-based model in conformational entropy calculations.

Wang J, Hou T.

J Chem Inf Model. 2012 May 25;52(5):1199-212. doi: 10.1021/ci300064d. Epub 2012 Apr 24.

15.

Determination of atomic desolvation energies from the structures of crystallized proteins.

Zhang C, Vasmatzis G, Cornette JL, DeLisi C.

J Mol Biol. 1997 Apr 4;267(3):707-26.

PMID:
9126848
16.

Increased protein backbone conformational entropy upon hydrophobic ligand binding.

Zídek L, Novotny MV, Stone MJ.

Nat Struct Biol. 1999 Dec;6(12):1118-21.

PMID:
10581552
18.

Structural and thermodynamic strategies for site-specific DNA binding proteins.

Jen-Jacobson L, Engler LE, Jacobson LA.

Structure. 2000 Oct 15;8(10):1015-23. Erratum in: Structure Fold Des 2000 Dec 15;8(12):following 251..

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