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Items: 1 to 20 of 108


Novel intron markers to study the phylogeny of closely related mammalian species.

Igea J, Juste J, Castresana J.

BMC Evol Biol. 2010 Nov 30;10:369. doi: 10.1186/1471-2148-10-369.


Development of rapidly evolving intron markers to estimate multilocus species trees of rodents.

Rodríguez-Prieto A, Igea J, Castresana J.

PLoS One. 2014 May 7;9(5):e96032. doi: 10.1371/journal.pone.0096032. eCollection 2014.


Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes.

Li C, Riethoven JJ, Ma L.

BMC Evol Biol. 2010 Mar 31;10:90. doi: 10.1186/1471-2148-10-90.


Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the tribe Bovini (Cetartiodactyla, Bovidae).

Hassanin A, An J, Ropiquet A, Nguyen TT, Couloux A.

Mol Phylogenet Evol. 2013 Mar;66(3):766-75. doi: 10.1016/j.ympev.2012.11.003. Epub 2012 Nov 15.


Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.

Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC.

BMC Genomics. 2012 Dec 12;13:698. doi: 10.1186/1471-2164-13-698.


OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.

Ranwez V, Delsuc F, Ranwez S, Belkhir K, Tilak MK, Douzery EJ.

BMC Evol Biol. 2007 Nov 30;7:241.


Extensive intron gain in the ancestor of placental mammals.

Kordiš D.

Biol Direct. 2011 Nov 23;6:59. doi: 10.1186/1745-6150-6-59.


Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics.

Matthee CA, Eick G, Willows-Munro S, Montgelard C, Pardini AT, Robinson TJ.

Mol Phylogenet Evol. 2007 Mar;42(3):827-37. Epub 2006 Oct 11.


Complex selection on 5' splice sites in intron-rich organisms.

Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV.

Genome Res. 2009 Nov;19(11):2021-7. doi: 10.1101/gr.089276.108. Epub 2009 Sep 10.


Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions.

Sims GE, Jun SR, Wu GA, Kim SH.

Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17077-82. doi: 10.1073/pnas.0909377106. Epub 2009 Sep 28.


Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome.

Backström N, Fagerberg S, Ellegren H.

Mol Ecol. 2008 Feb;17(4):964-80. Epub 2007 Oct 8.


Patterns and rates of intron divergence between humans and chimpanzees.

Gazave E, Marqués-Bonet T, Fernando O, Charlesworth B, Navarro A.

Genome Biol. 2007;8(2):R21.


Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion.

Torriani SF, Penselin D, Knogge W, Felder M, Taudien S, Platzer M, McDonald BA, Brunner PC.

Fungal Genet Biol. 2014 Jan;62:34-42. doi: 10.1016/j.fgb.2013.11.001. Epub 2013 Nov 13.


Congruence between nuclear and mitochondrial DNA: combination of multiple nuclear introns resolves a well-supported phylogeny of New World orioles (Icterus).

Jacobsen F, Friedman NR, Omland KE.

Mol Phylogenet Evol. 2010 Jul;56(1):419-27. doi: 10.1016/j.ympev.2010.03.035. Epub 2010 Apr 2.


ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.


Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae).

Near TJ, Bossu CM, Bradburd GS, Carlson RL, Harrington RC, Hollingsworth PR Jr, Keck BP, Etnier DA.

Syst Biol. 2011 Oct;60(5):565-95. doi: 10.1093/sysbio/syr052. Epub 2011 Jul 20.


Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.

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