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Items: 1 to 20 of 149

1.

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Boyle AP, Song L, Lee BK, London D, Keefe D, Birney E, Iyer VR, Crawford GE, Furey TS.

Genome Res. 2011 Mar;21(3):456-64. doi: 10.1101/gr.112656.110. Epub 2010 Nov 24.

2.

An expansive human regulatory lexicon encoded in transcription factor footprints.

Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.

3.

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.

Yardımcı GG, Frank CL, Crawford GE, Ohler U.

Nucleic Acids Res. 2014 Oct 29;42(19):11865-78. doi: 10.1093/nar/gku810. Epub 2014 Oct 7.

4.

High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.

Chumsakul O, Nakamura K, Kurata T, Sakamoto T, Hobman JL, Ogasawara N, Oshima T, Ishikawa S.

DNA Res. 2013 Aug;20(4):325-38. doi: 10.1093/dnares/dst013. Epub 2013 Apr 11.

5.

Protein-DNA interactions upstream from the human A gamma globin gene.

O'Neill D, Kaysen J, Donovan-Peluso M, Castle M, Bank A.

Nucleic Acids Res. 1990 Apr 25;18(8):1977-82.

6.

Members of the Sp transcription factor family control transcription from the uteroglobin promoter.

Dennig J, Hagen G, Beato M, Suske G.

J Biol Chem. 1995 May 26;270(21):12737-44.

7.

BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.

Kähärä J, Lähdesmäki H.

Bioinformatics. 2015 Sep 1;31(17):2852-9. doi: 10.1093/bioinformatics/btv294. Epub 2015 May 7.

PMID:
25957350
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Differential effect of zinc finger deletions on the binding of CTCF to the promoter of the amyloid precursor protein gene.

Quitschke WW, Taheny MJ, Fochtmann LJ, Vostrov AA.

Nucleic Acids Res. 2000 Sep 1;28(17):3370-8.

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14.

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

Muiño JM, Angenent GC, Kaufmann K.

Methods Mol Biol. 2011;754:293-305. doi: 10.1007/978-1-61779-154-3_17. Review.

PMID:
21720960
15.

Sp1 and Sp3 Are important regulators of AP-2gamma gene transcription.

Li M, Kellems RE.

Biol Reprod. 2003 Oct;69(4):1220-30. Epub 2003 Jun 11.

PMID:
12801994
16.

Th2-specific protein/DNA interactions at the proximal nuclear factor-AT site contribute to the functional activity of the human IL-4 promoter.

Li-Weber M, Salgame P, Hu C, Davydov IV, Laur O, Klevenz S, Krammer PH.

J Immunol. 1998 Aug 1;161(3):1380-9.

17.

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Quach B, Furey TS.

Bioinformatics. 2017 Apr 1;33(7):956-963. doi: 10.1093/bioinformatics/btw740.

PMID:
27993786
18.

Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF.

Chernukhin IV, Shamsuddin S, Robinson AF, Carne AF, Paul A, El-Kady AI, Lobanenkov VV, Klenova EM.

J Biol Chem. 2000 Sep 22;275(38):29915-21.

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