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Items: 1 to 20 of 94

2.

A methodology for detecting the orthology signal in a PPI network at a functional complex level.

Jancura P, Mavridou E, Carrillo-de Santa Pau E, Marchiori E.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S18. doi: 10.1186/1471-2105-13-S10-S18.

3.

Differential evolutionary rates of duplicated genes in protein interaction network.

Makino T, Suzuki Y, Gojobori T.

Gene. 2006 Dec 30;385:57-63. Epub 2006 Aug 17.

PMID:
16979849
4.

The evolutionary rate of a protein is influenced by features of the interacting partners.

Makino T, Gojobori T.

Mol Biol Evol. 2006 Apr;23(4):784-9. Epub 2006 Jan 11.

PMID:
16407461
5.

Evolutionary rate heterogeneity of core and attachment proteins in yeast protein complexes.

Chakraborty S, Ghosh TC.

Genome Biol Evol. 2013;5(7):1366-75. doi: 10.1093/gbe/evt096.

6.

Network archaeology: uncovering ancient networks from present-day interactions.

Navlakha S, Kingsford C.

PLoS Comput Biol. 2011 Apr;7(4):e1001119. doi: 10.1371/journal.pcbi.1001119. Epub 2011 Apr 14.

7.

Evolutionary rate in the protein interaction network.

Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

Science. 2002 Apr 26;296(5568):750-2.

8.

A network of protein-protein interactions in yeast.

Schwikowski B, Uetz P, Fields S.

Nat Biotechnol. 2000 Dec;18(12):1257-61.

PMID:
11101803
9.

Preferential duplication in the sparse part of yeast protein interaction network.

Li L, Huang Y, Xia X, Sun Z.

Mol Biol Evol. 2006 Dec;23(12):2467-73. Epub 2006 Sep 15.

PMID:
16980576
10.

Functional evolution of the yeast protein interaction network.

Kunin V, Pereira-Leal JB, Ouzounis CA.

Mol Biol Evol. 2004 Jul;21(7):1171-6. Epub 2004 Apr 7.

PMID:
15071090
11.

Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein-protein interaction networks.

Liang C, Luo J, Song D.

Mol Biosyst. 2014 Jul 29;10(9):2277-88. doi: 10.1039/c4mb00230j.

PMID:
24964354
12.

Correlation of disorder between S. cerevisiae interacting proteins.

Rue-Albrecht K, Shields DC, Khaldi N.

Mol Biosyst. 2012 Jan;8(1):417-25. doi: 10.1039/c1mb05214d. Epub 2011 Nov 23.

PMID:
22108582
13.

Evolutionary capacitance and control of protein stability in protein-protein interaction networks.

Dixit PD, Maslov S.

PLoS Comput Biol. 2013 Apr;9(4):e1003023. doi: 10.1371/journal.pcbi.1003023. Epub 2013 Apr 4.

14.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

15.

Detecting protein complexes in a PPI network: a gene ontology based multi-objective evolutionary approach.

Mukhopadhyay A, Ray S, De M.

Mol Biosyst. 2012 Nov;8(11):3036-48. doi: 10.1039/c2mb25302j. Epub 2012 Sep 18.

PMID:
22990765
16.
17.

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

Podder S, Mukhopadhyay P, Ghosh TC.

Gene. 2009 Jun 15;439(1-2):11-6. doi: 10.1016/j.gene.2009.03.005. Epub 2009 Mar 20.

PMID:
19306918
18.

Visualization and analysis of the complexome network of Saccharomyces cerevisiae.

Li SS, Xu K, Wilkins MR.

J Proteome Res. 2011 Oct 7;10(10):4744-56. doi: 10.1021/pr200548c. Epub 2011 Sep 7.

PMID:
21842913
19.
20.

Evolutionary constraints on hub and non-hub proteins in human protein interaction network: insight from protein connectivity and intrinsic disorder.

Manna B, Bhattacharya T, Kahali B, Ghosh TC.

Gene. 2009 Apr 1;434(1-2):50-5. doi: 10.1016/j.gene.2008.12.013. Epub 2008 Dec 29.

PMID:
19185053

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