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Items: 1 to 20 of 95

1.

Designing and engineering evolutionary robust genetic circuits.

Sleight SC, Bartley BA, Lieviant JA, Sauro HM.

J Biol Eng. 2010 Nov 1;4:12. doi: 10.1186/1754-1611-4-12.

2.

Visualization of evolutionary stability dynamics and competitive fitness of Escherichia coli engineered with randomized multigene circuits.

Sleight SC, Sauro HM.

ACS Synth Biol. 2013 Sep 20;2(9):519-28. doi: 10.1021/sb400055h. Epub 2013 Sep 4.

PMID:
24004180
3.

Rationally designed bidirectional promoter improves the evolutionary stability of synthetic genetic circuits.

Yang S, Sleight SC, Sauro HM.

Nucleic Acids Res. 2013 Jan 7;41(1):e33. doi: 10.1093/nar/gks972. Epub 2012 Oct 23.

4.

In-Fusion BioBrick assembly and re-engineering.

Sleight SC, Bartley BA, Lieviant JA, Sauro HM.

Nucleic Acids Res. 2010 May;38(8):2624-36. doi: 10.1093/nar/gkq179. Epub 2010 Apr 12.

5.

Randomized BioBrick assembly: a novel DNA assembly method for randomizing and optimizing genetic circuits and metabolic pathways.

Sleight SC, Sauro HM.

ACS Synth Biol. 2013 Sep 20;2(9):506-18. doi: 10.1021/sb4000542. Epub 2013 Jul 22.

PMID:
23841916
6.

Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly.

Torella JP, Boehm CR, Lienert F, Chen JH, Way JC, Silver PA.

Nucleic Acids Res. 2014 Jan;42(1):681-9. doi: 10.1093/nar/gkt860. Epub 2013 Sep 26.

7.

Ribozyme-based insulator parts buffer synthetic circuits from genetic context.

Lou C, Stanton B, Chen YJ, Munsky B, Voigt CA.

Nat Biotechnol. 2012 Nov;30(11):1137-42. doi: 10.1038/nbt.2401. Epub 2012 Oct 3.

8.

Introduction of customized inserts for s-treamlined assembly and optimization of BioBrick synthetic genetic circuits.

Norville JE, Derda R, Gupta S, Drinkwater KA, Belcher AM, Leschziner AE, Knight TF Jr.

J Biol Eng. 2010 Dec 20;4:17. doi: 10.1186/1754-1611-4-17.

9.

Predicting the Genetic Stability of Engineered DNA Sequences with the EFM Calculator.

Jack BR, Leonard SP, Mishler DM, Renda BA, Leon D, Suárez GA, Barrick JE.

ACS Synth Biol. 2015 Aug 21;4(8):939-43. doi: 10.1021/acssynbio.5b00068. Epub 2015 Jul 1.

PMID:
26096262
10.

Tools and Principles for Microbial Gene Circuit Engineering.

Bradley RW, Buck M, Wang B.

J Mol Biol. 2016 Feb 27;428(5 Pt B):862-88. doi: 10.1016/j.jmb.2015.10.004. Epub 2015 Oct 20. Review.

11.

AutoBioCAD: full biodesign automation of genetic circuits.

Rodrigo G, Jaramillo A.

ACS Synth Biol. 2013 May 17;2(5):230-6. doi: 10.1021/sb300084h. Epub 2012 Nov 26.

PMID:
23654253
12.

Short Synthetic Terminators for Assembly of Transcription Units in Vitro and Stable Chromosomal Integration in Yeast S. cerevisiae.

MacPherson M, Saka Y.

ACS Synth Biol. 2017 Jan 20;6(1):130-138. doi: 10.1021/acssynbio.6b00165. Epub 2016 Aug 25.

PMID:
27529501
13.

Novel Utilization of Terminators in the Design of Biologically Adjustable Synthetic Filters.

Lin MT, Wang CY, Xie HJ, Cheung CH, Hsieh CH, Juan HF, Chen BS, Lin C.

ACS Synth Biol. 2016 May 20;5(5):365-74. doi: 10.1021/acssynbio.5b00174. Epub 2016 Mar 22.

PMID:
26912179
14.

Modular control of multiple pathways using engineered orthogonal T7 polymerases.

Temme K, Hill R, Segall-Shapiro TH, Moser F, Voigt CA.

Nucleic Acids Res. 2012 Sep 1;40(17):8773-81. Epub 2012 Jun 28.

15.

Nonlinear protein degradation and the function of genetic circuits.

Buchler NE, Gerland U, Hwa T.

Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9559-64. Epub 2005 Jun 22.

16.

Sort-Seq Approach to Engineering a Formaldehyde-Inducible Promoter for Dynamically Regulated Escherichia coli Growth on Methanol.

Rohlhill J, Sandoval NR, Papoutsakis ET.

ACS Synth Biol. 2017 Aug 18;6(8):1584-1595. doi: 10.1021/acssynbio.7b00114. Epub 2017 May 9.

PMID:
28463494
17.

Robust design of biological circuits: evolutionary systems biology approach.

Chen BS, Hsu CY, Liou JJ.

J Biomed Biotechnol. 2011;2011:304236. doi: 10.1155/2011/304236. Epub 2011 Dec 7.

18.

OptCircuit: an optimization based method for computational design of genetic circuits.

Dasika MS, Maranas CD.

BMC Syst Biol. 2008 Mar 3;2:24. doi: 10.1186/1752-0509-2-24.

19.

Synthetic gene circuits: design with directed evolution.

Haseltine EL, Arnold FH.

Annu Rev Biophys Biomol Struct. 2007;36:1-19. Review.

PMID:
17243895
20.

Use of fluorescence microscopy to analyze genetic circuit dynamics.

Süel G.

Methods Enzymol. 2011;497:275-93. doi: 10.1016/B978-0-12-385075-1.00013-5.

PMID:
21601092

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