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Genes and pathways contributing to obesity: a systems biology view.

Drake TA. Drake TA. Prog Mol Biol Transl Sci. 2010;94:9-38. doi: 10.1016/B978-0-12-375003-7.00002-9. Prog Mol Biol Transl Sci. 2010. PMID: 21036321 Review.

Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks.

Zhou X, Liu B, Wu Z, Feng Y. Zhou X, et al. Artif Intell Med. 2007 Oct;41(2):87-104. doi: 10.1016/j.artmed.2007.07.007. Epub 2007 Sep 5. Artif Intell Med. 2007. PMID: 17804209

Genetic networks for the functional study of genomes.

Pisabarro AG, Pérez G, Lavín JL, Ramírez L. Pisabarro AG, et al. Brief Funct Genomic Proteomic. 2008 Jul;7(4):249-63. doi: 10.1093/bfgp/eln026. Epub 2008 Jun 25. Brief Funct Genomic Proteomic. 2008. PMID: 18579617

A systems biology approach to drug discovery.

Zhu J, Zhang B, Schadt EE. Zhu J, et al. Adv Genet. 2008;60:603-35. doi: 10.1016/S0065-2660(07)00421-X. Adv Genet. 2008. PMID: 18358334 Review.

Pathways and promoter networks analysis provides systems topology for systems biology approaches.

Nelson PJ, Werner T. Nelson PJ, et al. Semin Nephrol. 2010 Sep;30(5):477-86. doi: 10.1016/j.semnephrol.2010.07.005. Semin Nephrol. 2010. PMID: 21044759 Review.

MAVisto: a tool for biological network motif analysis.

Schwöbbermeyer H, Wünschiers R. Schwöbbermeyer H, et al. Methods Mol Biol. 2012;804:263-80. doi: 10.1007/978-1-61779-361-5_14. Methods Mol Biol. 2012. PMID: 22144158

A new multiple regression approach for the construction of genetic regulatory networks.

Zhang SQ, Ching WK, Tsing NK, Leung HY, Guo D. Zhang SQ, et al. Artif Intell Med. 2010 Feb-Mar;48(2-3):153-60. doi: 10.1016/j.artmed.2009.11.001. Epub 2009 Dec 5. Artif Intell Med. 2010. PMID: 19963359

Where are we in genomics?

Hocquette JF. Hocquette JF. J Physiol Pharmacol. 2005 Jun;56 Suppl 3:37-70. J Physiol Pharmacol. 2005. PMID: 16077195 Review.

Functional genomics and networks: new approaches in the extraction of complex gene modules.

Minguez P, Dopazo J. Minguez P, et al. Expert Rev Proteomics. 2010 Feb;7(1):55-63. doi: 10.1586/epr.09.103. Expert Rev Proteomics. 2010. PMID: 20121476 Review.

Nonlinear regulation enhances the phenotypic expression of trans-acting genetic polymorphisms.

Gjuvsland AB, Hayes BJ, Meuwissen TH, Plahte E, Omholt SW. Gjuvsland AB, et al. BMC Syst Biol. 2007 Jul 25;1:32. doi: 10.1186/1752-0509-1-32. BMC Syst Biol. 2007. PMID: 17651484 Free PMC article.

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