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Items: 1 to 20 of 129

1.

Genome-wide inference of regulatory networks in Streptomyces coelicolor.

Castro-Melchor M, Charaniya S, Karypis G, Takano E, Hu WS.

BMC Genomics. 2010 Oct 18;11:578. doi: 10.1186/1471-2164-11-578.

2.

Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.

Charaniya S, Mehra S, Lian W, Jayapal KP, Karypis G, Hu WS.

Nucleic Acids Res. 2007;35(21):7222-36. Epub 2007 Oct 24.

3.

Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2).

Lian W, Jayapal KP, Charaniya S, Mehra S, Glod F, Kyung YS, Sherman DH, Hu WS.

BMC Genomics. 2008 Jan 29;9:56. doi: 10.1186/1471-2164-9-56.

4.

Genome-scale analysis reveals a role for NdgR in the thiol oxidative stress response in Streptomyces coelicolor.

Kim JN, Jeong Y, Yoo JS, Roe JH, Cho BK, Kim BG.

BMC Genomics. 2015 Feb 22;16:116. doi: 10.1186/s12864-015-1311-0.

5.

Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor.

Laing E, Sidhu K, Hubbard SJ.

BMC Genomics. 2008 Feb 12;9:79. doi: 10.1186/1471-2164-9-79.

6.

A framework to analyze multiple time series data: a case study with Streptomyces coelicolor.

Mehra S, Lian W, Jayapal KP, Charaniya SP, Sherman DH, Hu WS.

J Ind Microbiol Biotechnol. 2006 Feb;33(2):159-72. Epub 2005 Oct 11.

7.
8.

Transcriptomic analysis of a classical model of carbon catabolite regulation in Streptomyces coelicolor.

Romero-Rodríguez A, Rocha D, Ruiz-Villafan B, Tierrafría V, Rodríguez-Sanoja R, Segura-González D, Sánchez S.

BMC Microbiol. 2016 Apr 27;16:77. doi: 10.1186/s12866-016-0690-y.

9.

Transcription of the rpsO-pnp operon of Streptomyces coelicolor involves four temporally regulated, stress responsive promoters.

Bralley P, Gatewood ML, Jones GH.

Gene. 2014 Feb 15;536(1):177-85. doi: 10.1016/j.gene.2013.10.055. Epub 2013 Nov 6.

PMID:
24211388
10.

Genome-wide dynamics of a bacterial response to antibiotics that target the cell envelope.

Hesketh A, Hill C, Mokhtar J, Novotna G, Tran N, Bibb M, Hong HJ.

BMC Genomics. 2011 May 11;12:226. doi: 10.1186/1471-2164-12-226.

11.

Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote.

Strakova E, Zikova A, Vohradsky J.

Nucleic Acids Res. 2014 Jan;42(2):748-63. doi: 10.1093/nar/gkt917. Epub 2013 Oct 23.

12.

Genome-wide analysis of in vivo binding of the master regulator DasR in Streptomyces coelicolor identifies novel non-canonical targets.

Świątek-Połatyńska MA, Bucca G, Laing E, Gubbens J, Titgemeyer F, Smith CP, Rigali S, van Wezel GP.

PLoS One. 2015 Apr 15;10(4):e0122479. doi: 10.1371/journal.pone.0122479. eCollection 2015.

13.
14.

Exploitation of the Streptomyces coelicolor A3(2) genome sequence for discovery of new natural products and biosynthetic pathways.

Challis GL.

J Ind Microbiol Biotechnol. 2014 Feb;41(2):219-32. doi: 10.1007/s10295-013-1383-2. Epub 2013 Dec 10. Review.

PMID:
24322202
15.
16.

Transcriptional activation of the pathway-specific regulator of the actinorhodin biosynthetic genes in Streptomyces coelicolor.

Uguru GC, Stephens KE, Stead JA, Towle JE, Baumberg S, McDowall KJ.

Mol Microbiol. 2005 Oct;58(1):131-50.

17.

A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA.

Li W, Wu J, Tao W, Zhao C, Wang Y, He X, Chandra G, Zhou X, Deng Z, Chater KF, Tao M.

FEMS Microbiol Lett. 2007 Jan;266(1):20-8. Epub 2006 Nov 14.

18.

ArgR of Streptomyces coelicolor is a versatile regulator.

Pérez-Redondo R, Rodríguez-García A, Botas A, Santamarta I, Martín JF, Liras P.

PLoS One. 2012;7(3):e32697. doi: 10.1371/journal.pone.0032697. Epub 2012 Mar 5.

19.

Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism.

Borodina I, Krabben P, Nielsen J.

Genome Res. 2005 Jun;15(6):820-9.

20.

Transcriptomics-based strain optimization tool for designing secondary metabolite overproducing strains of Streptomyces coelicolor.

Kim M, Yi JS, Lakshmanan M, Lee DY, Kim BG.

Biotechnol Bioeng. 2016 Mar;113(3):651-60. doi: 10.1002/bit.25830. Epub 2015 Sep 29.

PMID:
26369755

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