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Items: 1 to 20 of 136

1.

Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.

Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1354-64. doi: 10.1107/S1744309110021214. Epub 2010 Jul 27.

2.

Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase.

Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Structure. 2009 Feb 13;17(2):303-13. doi: 10.1016/j.str.2008.12.008.

3.

Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.

Xu Q, Mengin-Lecreulx D, Liu XW, Patin D, Farr CL, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.

MBio. 2015 Sep 15;6(5):e02327-14. doi: 10.1128/mBio.02327-14.

4.

Structures of a bifunctional cell wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase.

Xu Q, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA.

J Mol Biol. 2014 Jan 9;426(1):169-84. doi: 10.1016/j.jmb.2013.09.011. Epub 2013 Sep 16.

5.

Structural analysis of papain-like NlpC/P60 superfamily enzymes with a circularly permuted topology reveals potential lipid binding sites.

Xu Q, Rawlings ND, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.

PLoS One. 2011;6(7):e22013. doi: 10.1371/journal.pone.0022013. Epub 2011 Jul 22.

6.
7.

Characterization of proteins belonging to the CHAP-related superfamily within the Firmicutes.

Layec S, Decaris B, Leblond-Bourget N.

J Mol Microbiol Biotechnol. 2008;14(1-3):31-40.

PMID:
17957108
8.

Structural analysis of the L-alanoyl-D-glutamate endopeptidase domain of Listeria bacteriophage endolysin Ply500 reveals a new member of the LAS peptidase family.

Korndörfer IP, Kanitz A, Danzer J, Zimmer M, Loessner MJ, Skerra A.

Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):644-50. doi: 10.1107/S0907444908007890. Epub 2008 May 14.

PMID:
18560152
9.

Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.

Xu Q, Mengin-Lecreulx D, Patin D, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.

Structure. 2014 Dec 2;22(12):1799-809. doi: 10.1016/j.str.2014.09.018. Epub 2014 Nov 20.

10.

Characterization of LysB4, an endolysin from the Bacillus cereus-infecting bacteriophage B4.

Son B, Yun J, Lim JA, Shin H, Heu S, Ryu S.

BMC Microbiol. 2012 Mar 15;12:33. doi: 10.1186/1471-2180-12-33.

11.

RipD (Rv1566c) from Mycobacterium tuberculosis: adaptation of an NlpC/p60 domain to a non-catalytic peptidoglycan-binding function.

Böth D, Steiner EM, Izumi A, Schneider G, Schnell R.

Biochem J. 2014 Jan 1;457(1):33-41. doi: 10.1042/BJ20131227.

PMID:
24107184
12.

Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli.

Loessner MJ, Maier SK, Daubek-Puza H, Wendlinger G, Scherer S.

J Bacteriol. 1997 May;179(9):2845-51.

13.

Purification and partial characterization of the gamma-D-glutamyl-L-di-amino acid endopeptidase II from Bacillus sphaericus.

Bourgogne T, Vacheron MJ, Guinand M, Michel G.

Int J Biochem. 1992 Mar;24(3):471-6.

PMID:
1551459
14.
15.

Structure and lytic activity of a Bacillus anthracis prophage endolysin.

Low LY, Yang C, Perego M, Osterman A, Liddington RC.

J Biol Chem. 2005 Oct 21;280(42):35433-9. Epub 2005 Aug 15.

16.

Solution structure of the N-terminal catalytic domain of human H-REV107--a novel circular permutated NlpC/P60 domain.

Ren X, Lin J, Jin C, Xia B.

FEBS Lett. 2010 Oct 8;584(19):4222-6. doi: 10.1016/j.febslet.2010.09.015. Epub 2010 Sep 17.

18.

A novel type of peptidoglycan-binding domain highly specific for amidated D-Asp cross-bridge, identified in Lactobacillus casei bacteriophage endolysins.

Regulski K, Courtin P, Kulakauskas S, Chapot-Chartier MP.

J Biol Chem. 2013 Jul 12;288(28):20416-26. doi: 10.1074/jbc.M112.446344. Epub 2013 Jun 3.

19.
20.

Structural insights into the effector-immunity system Tse1/Tsi1 from Pseudomonas aeruginosa.

Benz J, Sendlmeier C, Barends TR, Meinhart A.

PLoS One. 2012;7(7):e40453. doi: 10.1371/journal.pone.0040453. Epub 2012 Jul 6.

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