Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 83

1.

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry.

Hyman RW, Jiang H, Fukushima M, Davis RW.

BMC Res Notes. 2010 Oct 8;3:257. doi: 10.1186/1756-0500-3-257.

2.

Basecalling with LifeTrace.

Walther D, Bartha G, Morris M.

Genome Res. 2001 May;11(5):875-88.

3.

Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.

Prosdocimi F, Peixoto FC, Ortega JM.

Genet Mol Res. 2004 Dec 30;3(4):483-92.

4.

QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform.

Shrestha RK, Lubinsky B, Bansode VB, Moinz MB, McCormack GP, Travers SA.

BMC Bioinformatics. 2014 Jan 30;15:33. doi: 10.1186/1471-2105-15-33.

5.

Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing.

Gharizadeh B, Herman ZS, Eason RG, Jejelowo O, Pourmand N.

Electrophoresis. 2006 Aug;27(15):3042-7.

6.

Assign 2.0: software for the analysis of Phred quality values for quality control of HLA sequencing-based typing.

Sayer DC, Goodridge DM, Christiansen FT.

Tissue Antigens. 2004 Nov;64(5):556-65.

PMID:
15496198
7.

Assembling genomic DNA sequences with PHRAP.

de la Bastide M, McCombie WR.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 11:Unit11.4. doi: 10.1002/0471250953.bi1104s17.

PMID:
18428783
8.

Mouse BAC ends quality assessment and sequence analyses.

Zhao S, Shatsman S, Ayodeji B, Geer K, Tsegaye G, Krol M, Gebregeorgis E, Shvartsbeyn A, Russell D, Overton L, Jiang L, Dimitrov G, Tran K, Shetty J, Malek JA, Feldblyum T, Nierman WC, Fraser CM.

Genome Res. 2001 Oct;11(10):1736-45. Erratum in: Genome Res 2001 Nov;11(11):1968.

9.

QC-Chain: fast and holistic quality control method for next-generation sequencing data.

Zhou Q, Su X, Wang A, Xu J, Ning K.

PLoS One. 2013;8(4):e60234. doi: 10.1371/journal.pone.0060234. Epub 2013 Apr 2.

10.
11.

Using quality scores and longer reads improves accuracy of Solexa read mapping.

Smith AD, Xuan Z, Zhang MQ.

BMC Bioinformatics. 2008 Feb 28;9:128. doi: 10.1186/1471-2105-9-128.

12.
13.

Magnetic bead purification of labeled DNA fragments for high-throughput capillary electrophoresis sequencing.

Elkin C, Kapur H, Smith T, Humphries D, Pollard M, Hammon N, Hawkins T.

Biotechniques. 2002 Jun;32(6):1296, 1298-1300, 1302.

PMID:
12074160
14.

Semi-automated unidirectional sequence analysis for mutation detection in a clinical diagnostic setting.

Ellard S, Shields B, Tysoe C, Treacy R, Yau S, Mattocks C, Wallace A.

Genet Test Mol Biomarkers. 2009 Jun;13(3):381-6. doi: 10.1089/gtmb.2008.0096.

PMID:
19405871
15.

Single-molecule DNA sequencing of a viral genome.

Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, Braslavsky I, Causey M, Colonell J, Dimeo J, Efcavitch JW, Giladi E, Gill J, Healy J, Jarosz M, Lapen D, Moulton K, Quake SR, Steinmann K, Thayer E, Tyurina A, Ward R, Weiss H, Xie Z.

Science. 2008 Apr 4;320(5872):106-9. doi: 10.1126/science.1150427.

16.

Blue: correcting sequencing errors using consensus and context.

Greenfield P, Duesing K, Papanicolaou A, Bauer DC.

Bioinformatics. 2014 Oct;30(19):2723-32. doi: 10.1093/bioinformatics/btu368. Epub 2014 Jun 11.

PMID:
24919879
17.

Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Ewing B, Hillier L, Wendl MC, Green P.

Genome Res. 1998 Mar;8(3):175-85.

18.

AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.

Criscuolo A, Brisse S.

Genomics. 2013 Nov-Dec;102(5-6):500-6. doi: 10.1016/j.ygeno.2013.07.011. Epub 2013 Aug 1.

19.

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.

Renaud G, Kircher M, Stenzel U, Kelso J.

Bioinformatics. 2013 May 1;29(9):1208-9. doi: 10.1093/bioinformatics/btt117. Epub 2013 Mar 6.

20.

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.

Chaisson MJ, Tesler G.

BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.

Supplemental Content

Support Center