Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 106

1.

Exposing the cancer genome atlas as a SPARQL endpoint.

Deus HF, Veiga DF, Freire PR, Weinstein JN, Mills GB, Almeida JS.

J Biomed Inform. 2010 Dec;43(6):998-1008. doi: 10.1016/j.jbi.2010.09.004.

2.

TopFed: TCGA tailored federated query processing and linking to LOD.

Saleem M, Padmanabhuni SS, Ngomo AC, Iqbal A, Almeida JS, Decker S, Deus HF.

J Biomed Semantics. 2014 Dec 3;5:47. doi: 10.1186/2041-1480-5-47. eCollection 2014.

3.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

4.

AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services.

Correa MC, Deus HF, Vasconcelos AT, Hayashi Y, Ajani JA, Patnana SV, Almeida JS.

BMC Med Inform Decis Mak. 2010 Oct 26;10:65. doi: 10.1186/1472-6947-10-65.

5.

S3QL: a distributed domain specific language for controlled semantic integration of life sciences data.

Deus HF, Correa MC, Stanislaus R, Miragaia M, Maass W, de Lencastre H, Fox R, Almeida JS.

BMC Bioinformatics. 2011 Jul 14;12:285. doi: 10.1186/1471-2105-12-285.

6.

SPARQL assist language-neutral query composer.

McCarthy L, Vandervalk B, Wilkinson M.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S2. doi: 10.1186/1471-2105-13-S1-S2.

7.

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases.

Chiba H, Uchiyama I.

BMC Bioinformatics. 2017 Feb 8;18(1):93. doi: 10.1186/s12859-017-1531-1.

8.

BioFed: federated query processing over life sciences linked open data.

Hasnain A, Mehmood Q, Sana E Zainab S, Saleem M, Warren C Jr, Zehra D, Decker S, Rebholz-Schuhmann D.

J Biomed Semantics. 2017 Mar 15;8(1):13. doi: 10.1186/s13326-017-0118-0.

9.

A self-updating road map of The Cancer Genome Atlas.

Robbins DE, Grüneberg A, Deus HF, Tanik MM, Almeida JS.

Bioinformatics. 2013 May 15;29(10):1333-40. doi: 10.1093/bioinformatics/btt141. Epub 2013 Apr 17.

10.

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

Waagmeester A, Kutmon M, Riutta A, Miller R, Willighagen EL, Evelo CT, Pico AR.

PLoS Comput Biol. 2016 Jun 23;12(6):e1004989. doi: 10.1371/journal.pcbi.1004989. eCollection 2016 Jun.

11.

Automatically exposing OpenLifeData via SADI semantic Web Services.

González AR, Callahan A, Cruz-Toledo J, Garcia A, Egaña Aranguren M, Dumontier M, Wilkinson MD.

J Biomed Semantics. 2014 Nov 19;5:46. doi: 10.1186/2041-1480-5-46. eCollection 2014.

12.

Processing SPARQL queries with regular expressions in RDF databases.

Lee J, Pham MD, Lee J, Han WS, Cho H, Yu H, Lee JH.

BMC Bioinformatics. 2011 Mar 29;12 Suppl 2:S6. doi: 10.1186/1471-2105-12-S2-S6.

13.

Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases.

Wollbrett J, Larmande P, de Lamotte F, Ruiz M.

BMC Bioinformatics. 2013 Apr 15;14:126. doi: 10.1186/1471-2105-14-126.

14.

Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.

Chiba H, Nishide H, Uchiyama I.

PLoS One. 2015 Apr 13;10(4):e0122802. doi: 10.1371/journal.pone.0122802. eCollection 2015.

15.

Federated ontology-based queries over cancer data.

González-Beltrán A, Tagger B, Finkelstein A.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S9. doi: 10.1186/1471-2105-13-S1-S9.

16.

Advanced SPARQL querying in small molecule databases.

Galgonek J, Hurt T, Michlíková V, Onderka P, Schwarz J, Vondrášek J.

J Cheminform. 2016 Jun 6;8:31. doi: 10.1186/s13321-016-0144-4. eCollection 2016.

17.

PepeSearch: Semantic Data for the Masses.

Vega-Gorgojo G, Giese M, Heggestøyl S, Soylu A, Waaler A.

PLoS One. 2016 Mar 11;11(3):e0151573. doi: 10.1371/journal.pone.0151573. eCollection 2016.

18.

SPARQL-enabled identifier conversion with Identifiers.org.

Wimalaratne SM, Bolleman J, Juty N, Katayama T, Dumontier M, Redaschi N, Le Novère N, Hermjakob H, Laibe C.

Bioinformatics. 2015 Jun 1;31(11):1875-7. doi: 10.1093/bioinformatics/btv064. Epub 2015 Jan 31.

19.

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16.

PMID:
19151099
20.

Semantic Web repositories for genomics data using the eXframe platform.

Merrill E, Corlosquet S, Ciccarese P, Clark T, Das S.

J Biomed Semantics. 2014 Jun 3;5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S3. doi: 10.1186/2041-1480-5-S1-S3. eCollection 2014.

Supplemental Content

Support Center