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Items: 1 to 20 of 59

1.

Allele-specific and heritable chromatin signatures in humans.

Birney E, Lieb JD, Furey TS, Crawford GE, Iyer VR.

Hum Mol Genet. 2010 Oct 15;19(R2):R204-9. doi: 10.1093/hmg/ddq404. Epub 2010 Sep 16. Review.

2.

Heritable individual-specific and allele-specific chromatin signatures in humans.

McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, Scott LJ, Morken MA, Kucera KS, Battenhouse A, Keefe D, Collins FS, Willard HF, Lieb JD, Furey TS, Crawford GE, Iyer VR, Birney E.

Science. 2010 Apr 9;328(5975):235-9. doi: 10.1126/science.1184655. Epub 2010 Mar 18.

3.

Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome.

Kadota M, Yang HH, Hu N, Wang C, Hu Y, Taylor PR, Buetow KH, Lee MP.

PLoS Genet. 2007 May 18;3(5):e81.

4.

Genome-wide survey of allele-specific splicing in humans.

Nembaware V, Lupindo B, Schouest K, Spillane C, Scheffler K, Seoighe C.

BMC Genomics. 2008 Jun 2;9:265. doi: 10.1186/1471-2164-9-265.

5.

Single-cell chromatin accessibility reveals principles of regulatory variation.

Buenrostro JD, Wu B, Litzenburger UM, Ruff D, Gonzales ML, Snyder MP, Chang HY, Greenleaf WJ.

Nature. 2015 Jul 23;523(7561):486-90. doi: 10.1038/nature14590. Epub 2015 Jun 17.

6.

Discovering chromatin motifs using FAIRE sequencing and the human diploid genome.

Yang CC, Buck MJ, Chen MH, Chen YF, Lan HC, Chen JJ, Cheng C, Liu CC.

BMC Genomics. 2013 May 8;14:310. doi: 10.1186/1471-2164-14-310.

7.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

8.

Chromatin conformation signatures: ideal human disease biomarkers?

Crutchley JL, Wang XQ, Ferraiuolo MA, Dostie J.

Biomark Med. 2010 Aug;4(4):611-29. doi: 10.2217/bmm.10.68. Review.

9.

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

Reddy TE, Gertz J, Pauli F, Kucera KS, Varley KE, Newberry KM, Marinov GK, Mortazavi A, Williams BA, Song L, Crawford GE, Wold B, Willard HF, Myers RM.

Genome Res. 2012 May;22(5):860-9. doi: 10.1101/gr.131201.111. Epub 2012 Feb 2.

10.

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome.

Shoemaker R, Deng J, Wang W, Zhang K.

Genome Res. 2010 Jul;20(7):883-9. doi: 10.1101/gr.104695.109. Epub 2010 Apr 23.

11.

High-throughput localization of functional elements by quantitative chromatin profiling.

Dorschner MO, Hawrylycz M, Humbert R, Wallace JC, Shafer A, Kawamoto J, Mack J, Hall R, Goldy J, Sabo PJ, Kohli A, Li Q, McArthur M, Stamatoyannopoulos JA.

Nat Methods. 2004 Dec;1(3):219-25. Epub 2004 Nov 18.

PMID:
15782197
12.

Chromatin architecture and the regulation of nuclear receptor inducible transcription.

Biddie SC.

J Neuroendocrinol. 2011 Jan;23(1):94-106. doi: 10.1111/j.1365-2826.2010.02079.x.

PMID:
21039975
13.

Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.

Light N, Adoue V, Ge B, Chen SH, Kwan T, Pastinen T.

Epigenetics. 2014 Sep;9(9):1238-51. doi: 10.4161/epi.29920. Epub 2014 Jul 23.

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16.

Allele-specific regulation of TCR beta variable gene segment chromatin structure.

Jackson AM, Krangel MS.

J Immunol. 2005 Oct 15;175(8):5186-91.

17.

Targeted screening of cis-regulatory variation in human haplotypes.

Verlaan DJ, Ge B, Grundberg E, Hoberman R, Lam KC, Koka V, Dias J, Gurd S, Martin NW, Mallmin H, Nilsson O, Harmsen E, Dewar K, Kwan T, Pastinen T.

Genome Res. 2009 Jan;19(1):118-27. doi: 10.1101/gr.084798.108. Epub 2008 Oct 29.

18.

Allele-specific transcriptional regulation of IRF4 in melanocytes is mediated by chromatin looping of the intronic rs12203592 enhancer to the IRF4 promoter.

Visser M, Palstra RJ, Kayser M.

Hum Mol Genet. 2015 May 1;24(9):2649-61. doi: 10.1093/hmg/ddv029. Epub 2015 Jan 27.

PMID:
25631878
19.

Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases.

Trynka G, Raychaudhuri S.

Curr Opin Genet Dev. 2013 Dec;23(6):635-41. doi: 10.1016/j.gde.2013.10.009. Epub 2013 Nov 25. Review.

20.

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, Collins FS.

Genome Res. 2006 Jan;16(1):123-31. Epub 2005 Dec 12.

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